Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26657 | 3' | -58.5 | NC_005808.1 | + | 2025 | 0.67 | 0.353055 |
Target: 5'- cUGGCGaAGUcGCGcAGGCGAuagaacaCGGCGCGc -3' miRNA: 3'- aACCGC-UCGuCGU-UCCGCU-------GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 3799 | 0.67 | 0.345409 |
Target: 5'- -cGGuCGGGCAGCAugaccAGGCGGuCGgggGCGCc -3' miRNA: 3'- aaCC-GCUCGUCGU-----UCCGCU-GC---UGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 4049 | 0.7 | 0.223357 |
Target: 5'- -cGGCGAGCGGC-AGGCcaGCGGCcCAg -3' miRNA: 3'- aaCCGCUCGUCGuUCCGc-UGCUGcGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 4375 | 0.69 | 0.290038 |
Target: 5'- -aGGCGGaugcGCAGCcAGGCGcCGuCGCGc -3' miRNA: 3'- aaCCGCU----CGUCGuUCCGCuGCuGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 4994 | 0.67 | 0.345409 |
Target: 5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3' miRNA: 3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 5476 | 0.67 | 0.389381 |
Target: 5'- -cGGCGAGguGUugccgauggGGGGUacGGCGAUGCu -3' miRNA: 3'- aaCCGCUCguCG---------UUCCG--CUGCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 5611 | 0.73 | 0.152258 |
Target: 5'- -cGGCGGGguGCGuuucgcgcguGGCG-CGGCGCAg -3' miRNA: 3'- aaCCGCUCguCGUu---------CCGCuGCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 6181 | 0.69 | 0.281997 |
Target: 5'- -aGGcCGGucuugccGCAGCGuuugcAGGUGACGGCGCGc -3' miRNA: 3'- aaCC-GCU-------CGUCGU-----UCCGCUGCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 6508 | 0.68 | 0.323992 |
Target: 5'- gUUGGCGAGCAGUuucuuGGCGAguuuuucggggucguCGuCGCc -3' miRNA: 3'- -AACCGCUCGUCGuu---CCGCU---------------GCuGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 8417 | 0.67 | 0.389381 |
Target: 5'- --aGCGAGCAGUucgcgGGGGCGucgcggaacauCGGCGCGa -3' miRNA: 3'- aacCGCUCGUCG-----UUCCGCu----------GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 8519 | 0.68 | 0.312876 |
Target: 5'- -gGGUGGGCcguGGCGuAGGCGAUGAaaCGCu -3' miRNA: 3'- aaCCGCUCG---UCGU-UCCGCUGCU--GCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 8564 | 0.78 | 0.057084 |
Target: 5'- aUGGCGGGCAGCGacAGGCGcgacACGACGg- -3' miRNA: 3'- aACCGCUCGUCGU--UCCGC----UGCUGCgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 8904 | 0.67 | 0.359952 |
Target: 5'- aUGGCGcuaucGGCGGCGcgcucgauggcuucGGGCGugGACa-- -3' miRNA: 3'- aACCGC-----UCGUCGU--------------UCCGCugCUGcgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 9199 | 0.67 | 0.389381 |
Target: 5'- gUUGGCcugcucGGCGGCGcGGCGcacguucuGCGGCGCGc -3' miRNA: 3'- -AACCGc-----UCGUCGUuCCGC--------UGCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 9319 | 0.68 | 0.312876 |
Target: 5'- cUGGCGGcgcacgucggcGCGGC-GGGCGGCGGCa-- -3' miRNA: 3'- aACCGCU-----------CGUCGuUCCGCUGCUGcgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 10249 | 0.7 | 0.241872 |
Target: 5'- -cGGCGAccGCAGCGaccuGGGCGGCgguugucggGACGCc -3' miRNA: 3'- aaCCGCU--CGUCGU----UCCGCUG---------CUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 11026 | 0.66 | 0.414603 |
Target: 5'- -aGGCGAGCAGCcaAAGgagcacgccuucccGCGAaccgaGGCGCu -3' miRNA: 3'- aaCCGCUCGUCG--UUC--------------CGCUg----CUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 11423 | 0.66 | 0.440804 |
Target: 5'- -cGGCGAGcCGGCGugcaggucgccgauaAGGCG-CGACaccgGCAg -3' miRNA: 3'- aaCCGCUC-GUCGU---------------UCCGCuGCUG----CGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 12847 | 0.67 | 0.371358 |
Target: 5'- cUGGC-AGCAGcCGAGGCcgaguucuacGGCGugGCc -3' miRNA: 3'- aACCGcUCGUC-GUUCCG----------CUGCugCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 13697 | 0.66 | 0.417467 |
Target: 5'- -gGGaCGAGUGGUc-GGCGACGGCcaGCAa -3' miRNA: 3'- aaCC-GCUCGUCGuuCCGCUGCUG--CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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