Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26657 | 3' | -58.5 | NC_005808.1 | + | 13728 | 0.66 | 0.398605 |
Target: 5'- --cGCcAGCAGCGAGGaCGugG-CGCGg -3' miRNA: 3'- aacCGcUCGUCGUUCC-GCugCuGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 14736 | 0.69 | 0.264382 |
Target: 5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3' miRNA: 3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 14783 | 0.69 | 0.254914 |
Target: 5'- --cGCGGGCAGCGcGcGCGAgGACGUg -3' miRNA: 3'- aacCGCUCGUCGUuC-CGCUgCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 15144 | 0.68 | 0.296749 |
Target: 5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3' miRNA: 3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 15340 | 0.67 | 0.353912 |
Target: 5'- -cGGUGAGCcGUAGGGUucgGACGuGCGCu -3' miRNA: 3'- aaCCGCUCGuCGUUCCG---CUGC-UGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 16238 | 0.71 | 0.184811 |
Target: 5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3' miRNA: 3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 16349 | 0.67 | 0.380298 |
Target: 5'- -cGGCGGGUgcccguGCcuucGGCGACGcGCGCAa -3' miRNA: 3'- aaCCGCUCGu-----CGuu--CCGCUGC-UGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 17521 | 0.71 | 0.211693 |
Target: 5'- -gGGCGcGCuGCGcuGGGUGGCGAUGCu -3' miRNA: 3'- aaCCGCuCGuCGU--UCCGCUGCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 17676 | 0.68 | 0.297502 |
Target: 5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3' miRNA: 3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 18041 | 0.67 | 0.389381 |
Target: 5'- -cGGCGGGCuGCuuggGGGCcuuacCGGCGCGg -3' miRNA: 3'- aaCCGCUCGuCGu---UCCGcu---GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 18124 | 0.67 | 0.388466 |
Target: 5'- cUGGCGcaggccaAGCAGCAGGuCGuCGGCGUc -3' miRNA: 3'- aACCGC-------UCGUCGUUCcGCuGCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 19594 | 0.67 | 0.362562 |
Target: 5'- -aGGCGcAGCAGCAGGcCGACcAgGCGa -3' miRNA: 3'- aaCCGC-UCGUCGUUCcGCUGcUgCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 21621 | 0.66 | 0.398605 |
Target: 5'- gUUGGCGAGCA-UGAGGaacaGGuCGGCGUAg -3' miRNA: 3'- -AACCGCUCGUcGUUCCg---CU-GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 22038 | 0.72 | 0.17981 |
Target: 5'- gUGGCucauGAGCAGCAAgcGGgGGCGcCGCAu -3' miRNA: 3'- aACCG----CUCGUCGUU--CCgCUGCuGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 22428 | 0.66 | 0.417467 |
Target: 5'- -aGGCGaAGCcGCAAGGCGcaccCGA-GCAa -3' miRNA: 3'- aaCCGC-UCGuCGUUCCGCu---GCUgCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 22864 | 0.68 | 0.337053 |
Target: 5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3' miRNA: 3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 23519 | 0.69 | 0.290038 |
Target: 5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3' miRNA: 3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 23578 | 0.69 | 0.275551 |
Target: 5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3' miRNA: 3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 23655 | 0.7 | 0.223357 |
Target: 5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3' miRNA: 3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 24315 | 0.73 | 0.148056 |
Target: 5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3' miRNA: 3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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