miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26657 3' -58.5 NC_005808.1 + 37241 0.7 0.235562
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 23578 0.69 0.275551
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5'
26657 3' -58.5 NC_005808.1 + 23519 0.69 0.290038
Target:  5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3'
miRNA:   3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5'
26657 3' -58.5 NC_005808.1 + 15144 0.68 0.296749
Target:  5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3'
miRNA:   3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5'
26657 3' -58.5 NC_005808.1 + 17676 0.68 0.297502
Target:  5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3'
miRNA:   3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5'
26657 3' -58.5 NC_005808.1 + 36133 0.68 0.305115
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26657 3' -58.5 NC_005808.1 + 6508 0.68 0.323992
Target:  5'- gUUGGCGAGCAGUuucuuGGCGAguuuuucggggucguCGuCGCc -3'
miRNA:   3'- -AACCGCUCGUCGuu---CCGCU---------------GCuGCGu -5'
26657 3' -58.5 NC_005808.1 + 25771 0.7 0.248322
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 25168 0.66 0.436863
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26657 3' -58.5 NC_005808.1 + 6181 0.69 0.281997
Target:  5'- -aGGcCGGucuugccGCAGCGuuugcAGGUGACGGCGCGc -3'
miRNA:   3'- aaCC-GCU-------CGUCGU-----UCCGCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 14736 0.69 0.264382
Target:  5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3'
miRNA:   3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 14783 0.69 0.254914
Target:  5'- --cGCGGGCAGCGcGcGCGAgGACGUg -3'
miRNA:   3'- aacCGCUCGUCGUuC-CGCUgCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 37057 0.69 0.254914
Target:  5'- gUGGCGGGCgaccugGGCGgaaccuGGGCGGcCGGCGUg -3'
miRNA:   3'- aACCGCUCG------UCGU------UCCGCU-GCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 10249 0.7 0.241872
Target:  5'- -cGGCGAccGCAGCGaccuGGGCGGCgguugucggGACGCc -3'
miRNA:   3'- aaCCGCU--CGUCGU----UCCGCUG---------CUGCGu -5'
26657 3' -58.5 NC_005808.1 + 4049 0.7 0.223357
Target:  5'- -cGGCGAGCGGC-AGGCcaGCGGCcCAg -3'
miRNA:   3'- aaCCGCUCGUCGuUCCGc-UGCUGcGU- -5'
26657 3' -58.5 NC_005808.1 + 17521 0.71 0.211693
Target:  5'- -gGGCGcGCuGCGcuGGGUGGCGAUGCu -3'
miRNA:   3'- aaCCGCuCGuCGU--UCCGCUGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 38720 0.71 0.205504
Target:  5'- -cGGCGAcgGCAGCGcGGCcuacagcGACGGCGCc -3'
miRNA:   3'- aaCCGCU--CGUCGUuCCG-------CUGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 22038 0.72 0.17981
Target:  5'- gUGGCucauGAGCAGCAAgcGGgGGCGcCGCAu -3'
miRNA:   3'- aACCG----CUCGUCGUU--CCgCUGCuGCGU- -5'
26657 3' -58.5 NC_005808.1 + 5611 0.73 0.152258
Target:  5'- -cGGCGGGguGCGuuucgcgcguGGCG-CGGCGCAg -3'
miRNA:   3'- aaCCGCUCguCGUu---------CCGCuGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 8564 0.78 0.057084
Target:  5'- aUGGCGGGCAGCGacAGGCGcgacACGACGg- -3'
miRNA:   3'- aACCGCUCGUCGU--UCCGC----UGCUGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.