miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26657 3' -58.5 NC_005808.1 + 29695 0.67 0.36169
Target:  5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3'
miRNA:   3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5'
26657 3' -58.5 NC_005808.1 + 22864 0.68 0.337053
Target:  5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3'
miRNA:   3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5'
26657 3' -58.5 NC_005808.1 + 11026 0.66 0.414603
Target:  5'- -aGGCGAGCAGCcaAAGgagcacgccuucccGCGAaccgaGGCGCu -3'
miRNA:   3'- aaCCGCUCGUCG--UUC--------------CGCUg----CUGCGu -5'
26657 3' -58.5 NC_005808.1 + 16349 0.67 0.380298
Target:  5'- -cGGCGGGUgcccguGCcuucGGCGACGcGCGCAa -3'
miRNA:   3'- aaCCGCUCGu-----CGuu--CCGCUGC-UGCGU- -5'
26657 3' -58.5 NC_005808.1 + 26413 0.68 0.328846
Target:  5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3'
miRNA:   3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 25168 0.66 0.436863
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26657 3' -58.5 NC_005808.1 + 8519 0.68 0.312876
Target:  5'- -gGGUGGGCcguGGCGuAGGCGAUGAaaCGCu -3'
miRNA:   3'- aaCCGCUCG---UCGU-UCCGCUGCU--GCGu -5'
26657 3' -58.5 NC_005808.1 + 34560 0.68 0.305115
Target:  5'- aUGGaCG-GCGGCAAGGaCGGCGGCc-- -3'
miRNA:   3'- aACC-GCuCGUCGUUCC-GCUGCUGcgu -5'
26657 3' -58.5 NC_005808.1 + 4994 0.67 0.345409
Target:  5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3'
miRNA:   3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 3799 0.67 0.345409
Target:  5'- -cGGuCGGGCAGCAugaccAGGCGGuCGgggGCGCc -3'
miRNA:   3'- aaCC-GCUCGUCGU-----UCCGCU-GC---UGCGu -5'
26657 3' -58.5 NC_005808.1 + 36133 0.68 0.305115
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26657 3' -58.5 NC_005808.1 + 6508 0.68 0.323992
Target:  5'- gUUGGCGAGCAGUuucuuGGCGAguuuuucggggucguCGuCGCc -3'
miRNA:   3'- -AACCGCUCGUCGuu---CCGCU---------------GCuGCGu -5'
26657 3' -58.5 NC_005808.1 + 9319 0.68 0.312876
Target:  5'- cUGGCGGcgcacgucggcGCGGC-GGGCGGCGGCa-- -3'
miRNA:   3'- aACCGCU-----------CGUCGuUCCGCUGCUGcgu -5'
26657 3' -58.5 NC_005808.1 + 28379 0.67 0.389381
Target:  5'- cUUGGCGAGguGUuccaguucGAcGcCGGCGGCGCGg -3'
miRNA:   3'- -AACCGCUCguCG--------UUcC-GCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 37241 0.7 0.235562
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 21621 0.66 0.398605
Target:  5'- gUUGGCGAGCA-UGAGGaacaGGuCGGCGUAg -3'
miRNA:   3'- -AACCGCUCGUcGUUCCg---CU-GCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 34551 0.66 0.398605
Target:  5'- aUGGuCGAGCAGCGguuGaGCGuCGAgGCu -3'
miRNA:   3'- aACC-GCUCGUCGUu--C-CGCuGCUgCGu -5'
26657 3' -58.5 NC_005808.1 + 11423 0.66 0.440804
Target:  5'- -cGGCGAGcCGGCGugcaggucgccgauaAGGCG-CGACaccgGCAg -3'
miRNA:   3'- aaCCGCUC-GUCGU---------------UCCGCuGCUG----CGU- -5'
26657 3' -58.5 NC_005808.1 + 24550 0.7 0.229391
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26657 3' -58.5 NC_005808.1 + 38753 0.65 0.443773
Target:  5'- -cGGCGAGguGCGcaaAGuGCGcuggauuggucgcaACGGCGCc -3'
miRNA:   3'- aaCCGCUCguCGU---UC-CGC--------------UGCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.