Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26657 | 3' | -58.5 | NC_005808.1 | + | 26413 | 0.68 | 0.328846 |
Target: 5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3' miRNA: 3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 22428 | 0.66 | 0.417467 |
Target: 5'- -aGGCGaAGCcGCAAGGCGcaccCGA-GCAa -3' miRNA: 3'- aaCCGC-UCGuCGUUCCGCu---GCUgCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 8417 | 0.67 | 0.389381 |
Target: 5'- --aGCGAGCAGUucgcgGGGGCGucgcggaacauCGGCGCGa -3' miRNA: 3'- aacCGCUCGUCG-----UUCCGCu----------GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 19594 | 0.67 | 0.362562 |
Target: 5'- -aGGCGcAGCAGCAGGcCGACcAgGCGa -3' miRNA: 3'- aaCCGC-UCGUCGUUCcGCUGcUgCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 29695 | 0.67 | 0.36169 |
Target: 5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3' miRNA: 3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 12847 | 0.67 | 0.371358 |
Target: 5'- cUGGC-AGCAGcCGAGGCcgaguucuacGGCGugGCc -3' miRNA: 3'- aACCGcUCGUC-GUUCCG----------CUGCugCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 4994 | 0.67 | 0.345409 |
Target: 5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3' miRNA: 3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 13697 | 0.66 | 0.417467 |
Target: 5'- -gGGaCGAGUGGUc-GGCGACGGCcaGCAa -3' miRNA: 3'- aaCC-GCUCGUCGuuCCGCUGCUG--CGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 13728 | 0.66 | 0.398605 |
Target: 5'- --cGCcAGCAGCGAGGaCGugG-CGCGg -3' miRNA: 3'- aacCGcUCGUCGUUCC-GCugCuGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 22864 | 0.68 | 0.337053 |
Target: 5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3' miRNA: 3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 16238 | 0.71 | 0.184811 |
Target: 5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3' miRNA: 3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 23655 | 0.7 | 0.223357 |
Target: 5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3' miRNA: 3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 24550 | 0.7 | 0.229391 |
Target: 5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3' miRNA: 3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 15144 | 0.68 | 0.296749 |
Target: 5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3' miRNA: 3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 17676 | 0.68 | 0.297502 |
Target: 5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3' miRNA: 3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 36133 | 0.68 | 0.305115 |
Target: 5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3' miRNA: 3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 9319 | 0.68 | 0.312876 |
Target: 5'- cUGGCGGcgcacgucggcGCGGC-GGGCGGCGGCa-- -3' miRNA: 3'- aACCGCU-----------CGUCGuUCCGCUGCUGcgu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 34551 | 0.66 | 0.398605 |
Target: 5'- aUGGuCGAGCAGCGguuGaGCGuCGAgGCu -3' miRNA: 3'- aACC-GCUCGUCGUu--C-CGCuGCUgCGu -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 21621 | 0.66 | 0.398605 |
Target: 5'- gUUGGCGAGCA-UGAGGaacaGGuCGGCGUAg -3' miRNA: 3'- -AACCGCUCGUcGUUCCg---CU-GCUGCGU- -5' |
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26657 | 3' | -58.5 | NC_005808.1 | + | 28379 | 0.67 | 0.389381 |
Target: 5'- cUUGGCGAGguGUuccaguucGAcGcCGGCGGCGCGg -3' miRNA: 3'- -AACCGCUCguCG--------UUcC-GCUGCUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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