miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26657 3' -58.5 NC_005808.1 + 41379 0.67 0.362562
Target:  5'- -aGGgGuauCAGCAaugggucgaaaAGGCGACGGCGUAg -3'
miRNA:   3'- aaCCgCuc-GUCGU-----------UCCGCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 38753 0.65 0.443773
Target:  5'- -cGGCGAGguGCGcaaAGuGCGcuggauuggucgcaACGGCGCc -3'
miRNA:   3'- aaCCGCUCguCGU---UC-CGC--------------UGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 38720 0.71 0.205504
Target:  5'- -cGGCGAcgGCAGCGcGGCcuacagcGACGGCGCc -3'
miRNA:   3'- aaCCGCU--CGUCGUuCCG-------CUGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 37241 0.7 0.235562
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 37057 0.69 0.254914
Target:  5'- gUGGCGGGCgaccugGGCGgaaccuGGGCGGcCGGCGUg -3'
miRNA:   3'- aACCGCUCG------UCGU------UCCGCU-GCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 36133 0.68 0.305115
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26657 3' -58.5 NC_005808.1 + 34560 0.68 0.305115
Target:  5'- aUGGaCG-GCGGCAAGGaCGGCGGCc-- -3'
miRNA:   3'- aACC-GCuCGUCGUUCC-GCUGCUGcgu -5'
26657 3' -58.5 NC_005808.1 + 34551 0.66 0.398605
Target:  5'- aUGGuCGAGCAGCGguuGaGCGuCGAgGCu -3'
miRNA:   3'- aACC-GCUCGUCGUu--C-CGCuGCUgCGu -5'
26657 3' -58.5 NC_005808.1 + 34214 0.7 0.219801
Target:  5'- --cGUGGGCGGCGauucucgaagauucgAGcGCGGCGGCGCAg -3'
miRNA:   3'- aacCGCUCGUCGU---------------UC-CGCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 31866 1.05 0.000483
Target:  5'- cUUGGCGAGCAGCAAGGCGACGACGCAu -3'
miRNA:   3'- -AACCGCUCGUCGUUCCGCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 31113 0.71 0.184811
Target:  5'- -cGGCGAGUggugcgagauAGCGGGgacuuuucagcGCGACGACGCu -3'
miRNA:   3'- aaCCGCUCG----------UCGUUC-----------CGCUGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 29695 0.67 0.36169
Target:  5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3'
miRNA:   3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5'
26657 3' -58.5 NC_005808.1 + 28379 0.67 0.389381
Target:  5'- cUUGGCGAGguGUuccaguucGAcGcCGGCGGCGCGg -3'
miRNA:   3'- -AACCGCUCguCG--------UUcC-GCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 26413 0.68 0.328846
Target:  5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3'
miRNA:   3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 25771 0.7 0.248322
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 25168 0.66 0.436863
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26657 3' -58.5 NC_005808.1 + 24837 0.67 0.389381
Target:  5'- aUGGCucGGGCAacgauuGCAGGGUGACGAgauaccCGCu -3'
miRNA:   3'- aACCG--CUCGU------CGUUCCGCUGCU------GCGu -5'
26657 3' -58.5 NC_005808.1 + 24550 0.7 0.229391
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26657 3' -58.5 NC_005808.1 + 24315 0.73 0.148056
Target:  5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3'
miRNA:   3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 23655 0.7 0.223357
Target:  5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3'
miRNA:   3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.