miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 8920 0.74 0.079654
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 9261 0.67 0.265605
Target:  5'- cGCGCCG-CCGAgcaGGCCaACGUcgacGGcGCCa -3'
miRNA:   3'- -CGCGGCuGGCU---UCGG-UGCGu---CC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 9371 0.66 0.307
Target:  5'- uGCGCCGccaggucGCCGAGGaagucaaUGCGCAgccgguguaccGGGCCg -3'
miRNA:   3'- -CGCGGC-------UGGCUUCg------GUGCGU-----------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 9943 0.71 0.154004
Target:  5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3'
miRNA:   3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 10464 0.7 0.161171
Target:  5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3'
miRNA:   3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 10521 0.67 0.293152
Target:  5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3'
miRNA:   3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5'
26658 3' -61.9 NC_005808.1 + 10760 0.69 0.190412
Target:  5'- cGCGCuCGACUucGGCC-CGCAGuucuucGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGcuUCGGuGCGUC------CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 10891 0.66 0.328308
Target:  5'- cGCGCgGcguauuccuccACCGGAauggcgaccugcccGCCGguuUGCAGGGCCUc -3'
miRNA:   3'- -CGCGgC-----------UGGCUU--------------CGGU---GCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 10928 1.09 0.000152
Target:  5'- cGCGCCGACCGAAGCCACGCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGGCUUCGGUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 11520 0.67 0.27229
Target:  5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3'
miRNA:   3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5'
26658 3' -61.9 NC_005808.1 + 11565 0.77 0.049281
Target:  5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3'
miRNA:   3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12081 0.73 0.09416
Target:  5'- uCGCCGGCCacGGCCGCGCugcuGGCCg -3'
miRNA:   3'- cGCGGCUGGcuUCGGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 12275 0.7 0.175946
Target:  5'- uGCGucCCGACCaGggGCaggcaGCGC-GGGCCg -3'
miRNA:   3'- -CGC--GGCUGG-CuuCGg----UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12359 0.73 0.09416
Target:  5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3'
miRNA:   3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12995 0.68 0.228264
Target:  5'- cCGCCcGCCGuucucguacAGGCCGCGCAGcgcaguggcgacGGCCUc -3'
miRNA:   3'- cGCGGcUGGC---------UUCGGUGCGUC------------CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 13164 0.68 0.240192
Target:  5'- aUGUCGGCCaGugucGGCCGCGCuGGGCg- -3'
miRNA:   3'- cGCGGCUGG-Cu---UCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 13248 0.66 0.338567
Target:  5'- aCGCCGGCCaagGgcGCCcaGCGCGGccgacacuGGCCg -3'
miRNA:   3'- cGCGGCUGG---CuuCGG--UGCGUC--------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 13290 0.75 0.071197
Target:  5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 13347 0.68 0.252636
Target:  5'- uCGCCG-CCGAAGUCGCGCAauuGcuucuggaaauaGGCCa -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---C------------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 13524 0.67 0.259054
Target:  5'- uGC-CCGAcaccgcgcCCGAGGCCGCcaaGCuggcGGGCCUg -3'
miRNA:   3'- -CGcGGCU--------GGCUUCGGUG---CGu---CCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.