miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 692 0.68 0.22249
Target:  5'- gGCGCCGGCCG-GGCCGCccaagauaccGCccaggauaGGGGCg- -3'
miRNA:   3'- -CGCGGCUGGCuUCGGUG----------CG--------UCCCGga -5'
26658 3' -61.9 NC_005808.1 + 750 0.76 0.065428
Target:  5'- gGCGcCCGGCCGgcGCCGcCGUAGgcGGCCUg -3'
miRNA:   3'- -CGC-GGCUGGCuuCGGU-GCGUC--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 811 0.67 0.279108
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26658 3' -61.9 NC_005808.1 + 1177 0.66 0.338567
Target:  5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3'
miRNA:   3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5'
26658 3' -61.9 NC_005808.1 + 3832 0.69 0.190412
Target:  5'- -gGCaCGACCGAGGCUACGUccAGcGGCg- -3'
miRNA:   3'- cgCG-GCUGGCUUCGGUGCG--UC-CCGga -5'
26658 3' -61.9 NC_005808.1 + 3870 0.69 0.211316
Target:  5'- gGCGCCGucGCUGuAGGCCGCGCu--GCCg -3'
miRNA:   3'- -CGCGGC--UGGC-UUCGGUGCGuccCGGa -5'
26658 3' -61.9 NC_005808.1 + 4016 0.73 0.104032
Target:  5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3'
miRNA:   3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 4698 0.68 0.240192
Target:  5'- uUGCCGACCcugcGGCaGCGC-GGGCCa -3'
miRNA:   3'- cGCGGCUGGcu--UCGgUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 4942 0.73 0.111145
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 6451 0.67 0.276365
Target:  5'- cGgGCCGGCCGGccugcgccugauuGCCgACGU-GGGCCg -3'
miRNA:   3'- -CgCGGCUGGCUu------------CGG-UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 6642 0.67 0.27229
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 7254 0.66 0.307742
Target:  5'- cGCGCUGuCCc-GGCUGCGuCAGGGCg- -3'
miRNA:   3'- -CGCGGCuGGcuUCGGUGC-GUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 7557 0.66 0.330655
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8178 0.76 0.058433
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 8206 0.66 0.300379
Target:  5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3'
miRNA:   3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 8392 0.73 0.108128
Target:  5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8465 0.7 0.166854
Target:  5'- gGCcCUGGCCGAcuGGCUACGCAGccagcgcgaGGCCg -3'
miRNA:   3'- -CGcGGCUGGCU--UCGGUGCGUC---------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 8557 0.7 0.165526
Target:  5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3'
miRNA:   3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 8718 0.7 0.157762
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 8806 0.7 0.171346
Target:  5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3'
miRNA:   3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.