miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 3870 0.69 0.211316
Target:  5'- gGCGCCGucGCUGuAGGCCGCGCu--GCCg -3'
miRNA:   3'- -CGCGGC--UGGC-UUCGGUGCGuccCGGa -5'
26658 3' -61.9 NC_005808.1 + 10464 0.7 0.161171
Target:  5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3'
miRNA:   3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8557 0.7 0.165526
Target:  5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3'
miRNA:   3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 8806 0.7 0.171346
Target:  5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3'
miRNA:   3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 35546 0.7 0.175946
Target:  5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3'
miRNA:   3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5'
26658 3' -61.9 NC_005808.1 + 23753 0.7 0.180656
Target:  5'- aGCGCCauGCCGgcGCCAC-C-GGGCCg -3'
miRNA:   3'- -CGCGGc-UGGCuuCGGUGcGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 35156 0.69 0.185477
Target:  5'- cGCGCgaaGGCCGAAGCCGaacUGCu-GGCCg -3'
miRNA:   3'- -CGCGg--CUGGCUUCGGU---GCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 19059 0.69 0.188919
Target:  5'- gGCGUCGaucagcguguccucGCCGAGGUCACGCGauugcaGGCCg -3'
miRNA:   3'- -CGCGGC--------------UGGCUUCGGUGCGUc-----CCGGa -5'
26658 3' -61.9 NC_005808.1 + 10760 0.69 0.190412
Target:  5'- cGCGCuCGACUucGGCC-CGCAGuucuucGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGcuUCGGuGCGUC------CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 17074 0.71 0.142058
Target:  5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3'
miRNA:   3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 24419 0.71 0.138268
Target:  5'- cGCaGCCGGcCCGAuuugucgguGCCGCGCGcGGCCUc -3'
miRNA:   3'- -CG-CGGCU-GGCUu--------CGGUGCGUcCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 20125 0.72 0.12745
Target:  5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3'
miRNA:   3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 11565 0.77 0.049281
Target:  5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3'
miRNA:   3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 19615 0.77 0.053668
Target:  5'- uUGCCGuCCGggGUCAUGC-GGGCCg -3'
miRNA:   3'- cGCGGCuGGCuuCGGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 35250 0.76 0.06011
Target:  5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3'
miRNA:   3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 13290 0.75 0.071197
Target:  5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 35367 0.74 0.084235
Target:  5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3'
miRNA:   3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 4016 0.73 0.104032
Target:  5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3'
miRNA:   3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8392 0.73 0.108128
Target:  5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 17448 0.72 0.124021
Target:  5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3'
miRNA:   3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.