miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 10928 1.09 0.000152
Target:  5'- cGCGCCGACCGAAGCCACGCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGGCUUCGGUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 31027 0.8 0.0303
Target:  5'- uUGCCGGCCGAGGCaauCGCGcGGGCCa -3'
miRNA:   3'- cGCGGCUGGCUUCGgu-GCGU-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 11565 0.77 0.049281
Target:  5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3'
miRNA:   3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 19615 0.77 0.053668
Target:  5'- uUGCCGuCCGggGUCAUGC-GGGCCg -3'
miRNA:   3'- cGCGGCuGGCuuCGGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8178 0.76 0.058433
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 35250 0.76 0.06011
Target:  5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3'
miRNA:   3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 750 0.76 0.065428
Target:  5'- gGCGcCCGGCCGgcGCCGcCGUAGgcGGCCUg -3'
miRNA:   3'- -CGC-GGCUGGCuuCGGU-GCGUC--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 13290 0.75 0.071197
Target:  5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24506 0.75 0.074054
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8920 0.74 0.079654
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 35367 0.74 0.084235
Target:  5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3'
miRNA:   3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 12359 0.73 0.09416
Target:  5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3'
miRNA:   3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12081 0.73 0.09416
Target:  5'- uCGCCGGCCacGGCCGCGCugcuGGCCg -3'
miRNA:   3'- cGCGGCUGGcuUCGGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 32918 0.73 0.09953
Target:  5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3'
miRNA:   3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5'
26658 3' -61.9 NC_005808.1 + 4016 0.73 0.104032
Target:  5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3'
miRNA:   3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 25671 0.73 0.108128
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8392 0.73 0.108128
Target:  5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 4942 0.73 0.111145
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 18757 0.72 0.113929
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 29177 0.72 0.117419
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.