Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 18744 | 0.67 | 0.309542 |
Target: 5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGccGCCCc -3' miRNA: 3'- cgCGuGCGUugCACG------------CGUCCGC--CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28731 | 0.67 | 0.327969 |
Target: 5'- cGCGCugGCGAggccgcCGgcaccgaucuggcacUGCGCGGGaacuGGCCg -3' miRNA: 3'- -CGCGugCGUU------GC---------------ACGCGUCCg---CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 6928 | 0.67 | 0.309542 |
Target: 5'- aCGUGC-CGACGUG-GUGGGgGGCCUa -3' miRNA: 3'- cGCGUGcGUUGCACgCGUCCgCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 22905 | 0.67 | 0.309542 |
Target: 5'- aGCGCGCGCuguCGgcUGUcgGCAGcGCGGCg- -3' miRNA: 3'- -CGCGUGCGuu-GC--ACG--CGUC-CGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 31681 | 0.67 | 0.316359 |
Target: 5'- uGC-CACGCuGCGUaaaGCaGCAGGUagggccagaagcaGGCCCa -3' miRNA: 3'- -CGcGUGCGuUGCA---CG-CGUCCG-------------CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 30283 | 0.67 | 0.317123 |
Target: 5'- uCGC-CGaguGCGUGCGCGugcucaagcccGGCGGCUa -3' miRNA: 3'- cGCGuGCgu-UGCACGCGU-----------CCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 4581 | 0.67 | 0.309542 |
Target: 5'- -aGCACGCcACGUuCaCGGGCGccGCCCg -3' miRNA: 3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 35128 | 0.67 | 0.3327 |
Target: 5'- cGUGCGCucgGCGGCGUGCuCGaucuGCGGCgCCa -3' miRNA: 3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 2440 | 0.67 | 0.339892 |
Target: 5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3' miRNA: 3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 5605 | 0.67 | 0.348013 |
Target: 5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3' miRNA: 3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 1357 | 0.68 | 0.273716 |
Target: 5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3' miRNA: 3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 32468 | 0.68 | 0.302101 |
Target: 5'- -gGCGCGCGGCuuuuuuucgGUGCuggcuuccuGCuGGGCGGCCg -3' miRNA: 3'- cgCGUGCGUUG---------CACG---------CG-UCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 18124 | 0.68 | 0.302101 |
Target: 5'- -aGCACGCAcCccGCGCcGGUaaGGCCCc -3' miRNA: 3'- cgCGUGCGUuGcaCGCGuCCG--CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27922 | 0.68 | 0.270999 |
Target: 5'- aGCGCGgacacguucuugaGCAGCG-GCGCGGcCGGCgCCa -3' miRNA: 3'- -CGCGUg------------CGUUGCaCGCGUCcGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39836 | 0.68 | 0.273716 |
Target: 5'- gGUGCuCGCGGCcacGCGCA-GCGGCgCCa -3' miRNA: 3'- -CGCGuGCGUUGca-CGCGUcCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 21839 | 0.68 | 0.287633 |
Target: 5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3' miRNA: 3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 2022 | 0.68 | 0.302101 |
Target: 5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3' miRNA: 3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 40836 | 0.68 | 0.294798 |
Target: 5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3' miRNA: 3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28724 | 0.68 | 0.294798 |
Target: 5'- gGCGCACGCGAgGaugaGCGCcuuGGCaucGUCCa -3' miRNA: 3'- -CGCGUGCGUUgCa---CGCGu--CCGc--CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 34293 | 0.68 | 0.294798 |
Target: 5'- aGCaGCGCGCAcCGcugGCugcacugccccgGCAGcGUGGCCCu -3' miRNA: 3'- -CG-CGUGCGUuGCa--CG------------CGUC-CGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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