miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 669 0.71 0.186055
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 13632 0.71 0.167269
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 4517 0.7 0.196129
Target:  5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3'
miRNA:   3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 38391 0.7 0.217147
Target:  5'- cCGCAagcCGCGACGUGCucgcggccaacauGCccgccaucgAGGCGGCCg -3'
miRNA:   3'- cGCGU---GCGUUGCACG-------------CG---------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 6372 0.7 0.223414
Target:  5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3'
miRNA:   3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 4097 0.7 0.195614
Target:  5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3'
miRNA:   3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 16061 0.7 0.217711
Target:  5'- cGCGCACGUGGCcgcCGCGcGCGGCgCCg -3'
miRNA:   3'- -CGCGUGCGUUGcacGCGUcCGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 25760 0.7 0.223414
Target:  5'- gGCGCGCugcugggcggcgGCAACGauggccgcgaUGCGCGcGGCGcGCUCg -3'
miRNA:   3'- -CGCGUG------------CGUUGC----------ACGCGU-CCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 17784 0.7 0.195614
Target:  5'- aUGCGCGCAGCuUGcCGCgauGGGCauuucccGGCCCg -3'
miRNA:   3'- cGCGUGCGUUGcAC-GCG---UCCG-------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 24792 0.7 0.212132
Target:  5'- cGCGCAgGC-GCG-GUGgAaGCGGCCCg -3'
miRNA:   3'- -CGCGUgCGuUGCaCGCgUcCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 9282 0.7 0.201343
Target:  5'- gGCGCGcCGCAgaACGUGCGCcGcGCcGCCg -3'
miRNA:   3'- -CGCGU-GCGU--UGCACGCGuC-CGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 11588 0.7 0.211581
Target:  5'- cCGCuCGCAgggccucACGccaGCGCAGGCGcuGCCCu -3'
miRNA:   3'- cGCGuGCGU-------UGCa--CGCGUCCGC--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 24464 0.7 0.223414
Target:  5'- uGCGCuucuucaacuuGCGCAGCGaguUGUGguGGCGaaugcgcgaaGCCCu -3'
miRNA:   3'- -CGCG-----------UGCGUUGC---ACGCguCCGC----------CGGG- -5'
26659 3' -60.5 NC_005808.1 + 25902 0.7 0.217711
Target:  5'- -aGCAUGgAACugaccgGCGCcaacGGCGGCCCg -3'
miRNA:   3'- cgCGUGCgUUGca----CGCGu---CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 8902 0.7 0.212132
Target:  5'- cGCGCugGCccGCGU-UGC-GGCuGGCCCg -3'
miRNA:   3'- -CGCGugCGu-UGCAcGCGuCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 24071 0.69 0.24751
Target:  5'- cGCGCACaGUAGCGgcgaccGCGCGGGgcaCGGgcacCCCg -3'
miRNA:   3'- -CGCGUG-CGUUGCa-----CGCGUCC---GCC----GGG- -5'
26659 3' -60.5 NC_005808.1 + 7472 0.69 0.24751
Target:  5'- uGCGcCGCGUAGUG-GCGguGGUauaGGCCCc -3'
miRNA:   3'- -CGC-GUGCGUUGCaCGCguCCG---CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 36147 0.69 0.241291
Target:  5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3'
miRNA:   3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 39660 0.69 0.241291
Target:  5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3'
miRNA:   3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5'
26659 3' -60.5 NC_005808.1 + 25486 0.69 0.24751
Target:  5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3'
miRNA:   3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.