Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 25486 | 0.69 | 0.24751 |
Target: 5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3' miRNA: 3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39660 | 0.69 | 0.241291 |
Target: 5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3' miRNA: 3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 36147 | 0.69 | 0.241291 |
Target: 5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3' miRNA: 3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8392 | 0.69 | 0.229245 |
Target: 5'- cGCGCugGCuGCGUaGC-CAGuCGGCCa -3' miRNA: 3'- -CGCGugCGuUGCA-CGcGUCcGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27574 | 0.71 | 0.167269 |
Target: 5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3' miRNA: 3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 30424 | 0.71 | 0.186055 |
Target: 5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3' miRNA: 3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 4517 | 0.7 | 0.196129 |
Target: 5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3' miRNA: 3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 38391 | 0.7 | 0.217147 |
Target: 5'- cCGCAagcCGCGACGUGCucgcggccaacauGCccgccaucgAGGCGGCCg -3' miRNA: 3'- cGCGU---GCGUUGCACG-------------CG---------UCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 16061 | 0.7 | 0.217711 |
Target: 5'- cGCGCACGUGGCcgcCGCGcGCGGCgCCg -3' miRNA: 3'- -CGCGUGCGUUGcacGCGUcCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 6372 | 0.7 | 0.223414 |
Target: 5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3' miRNA: 3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25760 | 0.7 | 0.223414 |
Target: 5'- gGCGCGCugcugggcggcgGCAACGauggccgcgaUGCGCGcGGCGcGCUCg -3' miRNA: 3'- -CGCGUG------------CGUUGC----------ACGCGU-CCGC-CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 16125 | 0.74 | 0.118764 |
Target: 5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3' miRNA: 3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28625 | 0.74 | 0.117462 |
Target: 5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3' miRNA: 3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 42140 | 0.74 | 0.117462 |
Target: 5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3' miRNA: 3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 26818 | 0.76 | 0.075131 |
Target: 5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3' miRNA: 3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28332 | 0.77 | 0.069019 |
Target: 5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3' miRNA: 3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8114 | 0.77 | 0.065213 |
Target: 5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3' miRNA: 3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27874 | 0.77 | 0.06161 |
Target: 5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3' miRNA: 3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 37538 | 0.82 | 0.028365 |
Target: 5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3' miRNA: 3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 10601 | 0.66 | 0.400495 |
Target: 5'- uUGCGCGUGGCG-GCGgaaAGcGUGGCCg -3' miRNA: 3'- cGCGUGCGUUGCaCGCg--UC-CGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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