miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 36488 0.69 0.25386
Target:  5'- aGCGCAggccggucuugcCGCAGCGUuuGCAGGUgacGGCgCg -3'
miRNA:   3'- -CGCGU------------GCGUUGCAcgCGUCCG---CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 669 0.71 0.186055
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 27874 0.77 0.06161
Target:  5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3'
miRNA:   3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 27538 0.69 0.241291
Target:  5'- uCGCGUGguGCGUGCGC-GGCGcGCUg -3'
miRNA:   3'- cGCGUGCguUGCACGCGuCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 37538 0.82 0.028365
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 30283 0.67 0.317123
Target:  5'- uCGC-CGaguGCGUGCGCGugcucaagcccGGCGGCUa -3'
miRNA:   3'- cGCGuGCgu-UGCACGCGU-----------CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 28332 0.77 0.069019
Target:  5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3'
miRNA:   3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 6928 0.67 0.309542
Target:  5'- aCGUGC-CGACGUG-GUGGGgGGCCUa -3'
miRNA:   3'- cGCGUGcGUUGCACgCGUCCgCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 18744 0.67 0.309542
Target:  5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGccGCCCc -3'
miRNA:   3'- cgCGuGCGUugCACG------------CGUCCGC--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 18164 0.68 0.287633
Target:  5'- gGCGCGaa-GGCGUccugguucGCGCcggcuucGGCGGCCCa -3'
miRNA:   3'- -CGCGUgcgUUGCA--------CGCGu------CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 1357 0.68 0.273716
Target:  5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3'
miRNA:   3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5'
26659 3' -60.5 NC_005808.1 + 4190 0.68 0.266963
Target:  5'- uGCGCcgggaaGCAACGcugcaGCGCAGGCuGGCg- -3'
miRNA:   3'- -CGCGug----CGUUGCa----CGCGUCCG-CCGgg -5'
26659 3' -60.5 NC_005808.1 + 34481 0.69 0.260344
Target:  5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3'
miRNA:   3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 29496 0.69 0.229245
Target:  5'- cUGgGCGCGACGUGCGagcgcguGGGCaacgcGCCCa -3'
miRNA:   3'- cGCgUGCGUUGCACGCg------UCCGc----CGGG- -5'
26659 3' -60.5 NC_005808.1 + 8902 0.7 0.212132
Target:  5'- cGCGCugGCccGCGU-UGC-GGCuGGCCCg -3'
miRNA:   3'- -CGCGugCGu-UGCAcGCGuCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 4097 0.7 0.195614
Target:  5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3'
miRNA:   3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 750 0.71 0.191034
Target:  5'- gGCGCcCGgcCGGCGccGcCGUAGGCGGCCUg -3'
miRNA:   3'- -CGCGuGC--GUUGCa-C-GCGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 41578 0.72 0.162846
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 38620 0.72 0.142275
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 28625 0.74 0.117462
Target:  5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.