miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26661 5' -54.6 NC_005808.1 + 4214 0.67 0.606986
Target:  5'- aUCGGCGCGCaCCGugCcaucgucgcAGAcguAGAugGCg -3'
miRNA:   3'- cAGUCGCGUG-GGCugG---------UCU---UCUugUG- -5'
26661 5' -54.6 NC_005808.1 + 6565 0.67 0.584366
Target:  5'- cGUCAGCGCAUCCuugaGGAAGuagcccAGCACg -3'
miRNA:   3'- -CAGUCGCGUGGGcuggUCUUC------UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 6638 0.66 0.652418
Target:  5'- uUC-GCGCGCuuGGCCGGAGuGuccGCGCu -3'
miRNA:   3'- cAGuCGCGUGggCUGGUCUU-Cu--UGUG- -5'
26661 5' -54.6 NC_005808.1 + 7230 0.66 0.652418
Target:  5'- cGUCAGCGCGUCgGGCCuGGGcuucaacgucauGAGCGCc -3'
miRNA:   3'- -CAGUCGCGUGGgCUGGuCUU------------CUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 7607 0.68 0.550777
Target:  5'- -cCGGcCGCgaGCCagCGugCGGAAGAACACu -3'
miRNA:   3'- caGUC-GCG--UGG--GCugGUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 8722 0.68 0.528712
Target:  5'- uGUC-GCGCACCUugaGCCGGGacaccAGGGCGCg -3'
miRNA:   3'- -CAGuCGCGUGGGc--UGGUCU-----UCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 9231 0.66 0.663754
Target:  5'- -gCGGCGCGCCCGGCggCAGuuccAGuuCACc -3'
miRNA:   3'- caGUCGCGUGGGCUG--GUCu---UCuuGUG- -5'
26661 5' -54.6 NC_005808.1 + 9854 0.66 0.663754
Target:  5'- uUCGGCGUGCgCGACCuGGccgcguGGAACGa -3'
miRNA:   3'- cAGUCGCGUGgGCUGGuCU------UCUUGUg -5'
26661 5' -54.6 NC_005808.1 + 9946 0.71 0.38623
Target:  5'- -cCA-CGCGCCUGGCCgAGAAGcAGCGCg -3'
miRNA:   3'- caGUcGCGUGGGCUGG-UCUUC-UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 10013 0.66 0.675059
Target:  5'- ---cGCGCGCCCGGCCcccgcccuGGuAGAACu- -3'
miRNA:   3'- caguCGCGUGGGCUGG--------UCuUCUUGug -5'
26661 5' -54.6 NC_005808.1 + 11959 1.08 0.00084
Target:  5'- gGUCAGCGCACCCGACCAGAAGAACACc -3'
miRNA:   3'- -CAGUCGCGUGGGCUGGUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 12282 0.73 0.271477
Target:  5'- gGUguGCuGCGuCCCGACCAGggGcaggcAGCGCg -3'
miRNA:   3'- -CAguCG-CGU-GGGCUGGUCuuC-----UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 14267 0.66 0.641062
Target:  5'- ---cGCuGCGCCUGACCuauGAcaAGGACACc -3'
miRNA:   3'- caguCG-CGUGGGCUGGu--CU--UCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 14695 0.7 0.405032
Target:  5'- aUCuGCGCACCgGcGCCGGAAGcauggaagccGACGCa -3'
miRNA:   3'- cAGuCGCGUGGgC-UGGUCUUC----------UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 23426 0.7 0.395559
Target:  5'- gGUCAGUGCgACgCCGGCCGGGaugcGGAugguucGCGCg -3'
miRNA:   3'- -CAGUCGCG-UG-GGCUGGUCU----UCU------UGUG- -5'
26661 5' -54.6 NC_005808.1 + 23943 0.66 0.652418
Target:  5'- gGUCAGgCGcCGCCCGGCgAGGucGGCAUu -3'
miRNA:   3'- -CAGUC-GC-GUGGGCUGgUCUucUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 25091 0.74 0.237689
Target:  5'- -gCAGCGCGCCCGGCgCcGuGGGAUACa -3'
miRNA:   3'- caGUCGCGUGGGCUG-GuCuUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 25810 0.67 0.595659
Target:  5'- -gCAGCGCGCCCaGcgugcugccGCCGGuGAGGACGa -3'
miRNA:   3'- caGUCGCGUGGG-C---------UGGUC-UUCUUGUg -5'
26661 5' -54.6 NC_005808.1 + 26746 0.66 0.641062
Target:  5'- -cCAGCGCGCCCGcugcgauuCCAuAAG-GCGCa -3'
miRNA:   3'- caGUCGCGUGGGCu-------GGUcUUCuUGUG- -5'
26661 5' -54.6 NC_005808.1 + 28274 0.69 0.454463
Target:  5'- cGUCGGCGUGgCCGACCuGGAcaaGGCGCc -3'
miRNA:   3'- -CAGUCGCGUgGGCUGGuCUUc--UUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.