miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26661 5' -54.6 NC_005808.1 + 9231 0.66 0.663754
Target:  5'- -gCGGCGCGCCCGGCggCAGuuccAGuuCACc -3'
miRNA:   3'- caGUCGCGUGGGCUG--GUCu---UCuuGUG- -5'
26661 5' -54.6 NC_005808.1 + 6565 0.67 0.584366
Target:  5'- cGUCAGCGCAUCCuugaGGAAGuagcccAGCACg -3'
miRNA:   3'- -CAGUCGCGUGGGcuggUCUUC------UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 4214 0.67 0.606986
Target:  5'- aUCGGCGCGCaCCGugCcaucgucgcAGAcguAGAugGCg -3'
miRNA:   3'- cAGUCGCGUG-GGCugG---------UCU---UCUugUG- -5'
26661 5' -54.6 NC_005808.1 + 39852 0.67 0.618335
Target:  5'- gGUCGGCaCGCCCGAgCAGcgccGGGccGCGCu -3'
miRNA:   3'- -CAGUCGcGUGGGCUgGUCu---UCU--UGUG- -5'
26661 5' -54.6 NC_005808.1 + 26746 0.66 0.641062
Target:  5'- -cCAGCGCGCCCGcugcgauuCCAuAAG-GCGCa -3'
miRNA:   3'- caGUCGCGUGGGCu-------GGUcUUCuUGUG- -5'
26661 5' -54.6 NC_005808.1 + 30901 0.66 0.651283
Target:  5'- -cCAGCcgacacuGCACCgGAUaCAGAAGGGCAUc -3'
miRNA:   3'- caGUCG-------CGUGGgCUG-GUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 34781 0.66 0.651283
Target:  5'- -gCAGcCGCGCCuCGACCAuaucagcGAguGGGACAUg -3'
miRNA:   3'- caGUC-GCGUGG-GCUGGU-------CU--UCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 6638 0.66 0.652418
Target:  5'- uUC-GCGCGCuuGGCCGGAGuGuccGCGCu -3'
miRNA:   3'- cAGuCGCGUGggCUGGUCUU-Cu--UGUG- -5'
26661 5' -54.6 NC_005808.1 + 23943 0.66 0.652418
Target:  5'- gGUCAGgCGcCGCCCGGCgAGGucGGCAUu -3'
miRNA:   3'- -CAGUC-GC-GUGGGCUGgUCUucUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 8722 0.68 0.528712
Target:  5'- uGUC-GCGCACCUugaGCCGGGacaccAGGGCGCg -3'
miRNA:   3'- -CAGuCGCGUGGGc--UGGUCU-----UCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 28316 0.68 0.517802
Target:  5'- cUCGGCGCGCUCGGCguCGGAcucGAugGCc -3'
miRNA:   3'- cAGUCGCGUGGGCUG--GUCUu--CUugUG- -5'
26661 5' -54.6 NC_005808.1 + 42289 0.68 0.506982
Target:  5'- -aCGGCaCGCCCuGGaCGGAAGAGCGCg -3'
miRNA:   3'- caGUCGcGUGGG-CUgGUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 25091 0.74 0.237689
Target:  5'- -gCAGCGCGCCCGGCgCcGuGGGAUACa -3'
miRNA:   3'- caGUCGCGUGGGCUG-GuCuUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 38504 0.71 0.359129
Target:  5'- uUCAGCGCcgcccACCUGGCCGGccuGAugGCu -3'
miRNA:   3'- cAGUCGCG-----UGGGCUGGUCuu-CUugUG- -5'
26661 5' -54.6 NC_005808.1 + 40653 0.71 0.38623
Target:  5'- ---cGCGCGCUCGACCAGAAcc-CGCa -3'
miRNA:   3'- caguCGCGUGGGCUGGUCUUcuuGUG- -5'
26661 5' -54.6 NC_005808.1 + 23426 0.7 0.395559
Target:  5'- gGUCAGUGCgACgCCGGCCGGGaugcGGAugguucGCGCg -3'
miRNA:   3'- -CAGUCGCG-UG-GGCUGGUCU----UCU------UGUG- -5'
26661 5' -54.6 NC_005808.1 + 28720 0.7 0.395559
Target:  5'- uGUCGGCGCACgCGA--GGAuGAGCGCc -3'
miRNA:   3'- -CAGUCGCGUGgGCUggUCUuCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 36243 0.7 0.395559
Target:  5'- -cCAGCGC-CCCGGCCuucgGGccGGGCGCu -3'
miRNA:   3'- caGUCGCGuGGGCUGG----UCuuCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 39553 0.69 0.464738
Target:  5'- ---cGUGCugCUGACCAGGauGGAGCAg -3'
miRNA:   3'- caguCGCGugGGCUGGUCU--UCUUGUg -5'
26661 5' -54.6 NC_005808.1 + 32658 0.69 0.485642
Target:  5'- uUCGGCGCcgcgaagcuGCCCGACguGAAgcccGAGCAg -3'
miRNA:   3'- cAGUCGCG---------UGGGCUGguCUU----CUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.