miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26661 5' -54.6 NC_005808.1 + 32658 0.69 0.485642
Target:  5'- uUCGGCGCcgcgaagcuGCCCGACguGAAgcccGAGCAg -3'
miRNA:   3'- cAGUCGCG---------UGGGCUGguCUU----CUUGUg -5'
26661 5' -54.6 NC_005808.1 + 42289 0.68 0.506982
Target:  5'- -aCGGCaCGCCCuGGaCGGAAGAGCGCg -3'
miRNA:   3'- caGUCGcGUGGG-CUgGUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 25810 0.67 0.595659
Target:  5'- -gCAGCGCGCCCaGcgugcugccGCCGGuGAGGACGa -3'
miRNA:   3'- caGUCGCGUGGG-C---------UGGUC-UUCUUGUg -5'
26661 5' -54.6 NC_005808.1 + 35519 0.67 0.618335
Target:  5'- cGUCGGCuGCgGCCUggauGACCAGGGccGGGCGCu -3'
miRNA:   3'- -CAGUCG-CG-UGGG----CUGGUCUU--CUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 14267 0.66 0.641062
Target:  5'- ---cGCuGCGCCUGACCuauGAcaAGGACACc -3'
miRNA:   3'- caguCG-CGUGGGCUGGu--CU--UCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 7230 0.66 0.652418
Target:  5'- cGUCAGCGCGUCgGGCCuGGGcuucaacgucauGAGCGCc -3'
miRNA:   3'- -CAGUCGCGUGGgCUGGuCUU------------CUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 29638 0.66 0.663754
Target:  5'- --gGGCGCGgCCGACCuGAcgcgauaccccGAGCACg -3'
miRNA:   3'- cagUCGCGUgGGCUGGuCUu----------CUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 7607 0.68 0.550777
Target:  5'- -cCGGcCGCgaGCCagCGugCGGAAGAACACu -3'
miRNA:   3'- caGUC-GCG--UGG--GCugGUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 28274 0.69 0.454463
Target:  5'- cGUCGGCGUGgCCGACCuGGAcaaGGCGCc -3'
miRNA:   3'- -CAGUCGCGUgGGCUGGuCUUc--UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 14695 0.7 0.405032
Target:  5'- aUCuGCGCACCgGcGCCGGAAGcauggaagccGACGCa -3'
miRNA:   3'- cAGuCGCGUGGgC-UGGUCUUC----------UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 9946 0.71 0.38623
Target:  5'- -cCA-CGCGCCUGGCCgAGAAGcAGCGCg -3'
miRNA:   3'- caGUcGCGUGGGCUGG-UCUUC-UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 36321 0.71 0.368013
Target:  5'- -cCAGCcaaaGCGCCCGGCCcGAAGGccgggGCGCu -3'
miRNA:   3'- caGUCG----CGUGGGCUGGuCUUCU-----UGUG- -5'
26661 5' -54.6 NC_005808.1 + 12282 0.73 0.271477
Target:  5'- gGUguGCuGCGuCCCGACCAGggGcaggcAGCGCg -3'
miRNA:   3'- -CAguCG-CGU-GGGCUGGUCuuC-----UUGUG- -5'
26661 5' -54.6 NC_005808.1 + 30078 0.74 0.237689
Target:  5'- --gGGCGCGgCCGugCAGuuGGAGCACg -3'
miRNA:   3'- cagUCGCGUgGGCugGUCu-UCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 11959 1.08 0.00084
Target:  5'- gGUCAGCGCACCCGACCAGAAGAACACc -3'
miRNA:   3'- -CAGUCGCGUGGGCUGGUCUUCUUGUG- -5'
26661 5' -54.6 NC_005808.1 + 9854 0.66 0.663754
Target:  5'- uUCGGCGUGCgCGACCuGGccgcguGGAACGa -3'
miRNA:   3'- cAGUCGCGUGgGCUGGuCU------UCUUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.