Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26662 | 5' | -57.5 | NC_005808.1 | + | 16242 | 0.66 | 0.517823 |
Target: 5'- gGCGUCGGugA---ACUCCGACGCg-- -3' miRNA: 3'- -CGUAGCCugUgacUGGGGCUGCGgau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 13976 | 0.66 | 0.48653 |
Target: 5'- aCAUCGcccugaACUGgaacaACCCCGACGCCa- -3' miRNA: 3'- cGUAGCcug---UGAC-----UGGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 13472 | 0.69 | 0.329636 |
Target: 5'- gGUGUCGGGCA-UGACCUgggCGAUGCCg- -3' miRNA: 3'- -CGUAGCCUGUgACUGGG---GCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 12232 | 1.08 | 0.000477 |
Target: 5'- cGCAUCGGACACUGACCCCGACGCCUAc -3' miRNA: 3'- -CGUAGCCUGUGACUGGGGCUGCGGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 9070 | 0.7 | 0.283914 |
Target: 5'- gGUAUCGGGgugcauccccuCACUGGCCgCGAgGCCg- -3' miRNA: 3'- -CGUAGCCU-----------GUGACUGGgGCUgCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 7662 | 0.67 | 0.466173 |
Target: 5'- gGCAgaCGGACA--GACCCUGAC-CCUAc -3' miRNA: 3'- -CGUa-GCCUGUgaCUGGGGCUGcGGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 7433 | 0.66 | 0.507297 |
Target: 5'- gGCGccCGGACACUu-CCUCGACGCg-- -3' miRNA: 3'- -CGUa-GCCUGUGAcuGGGGCUGCGgau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 6603 | 0.68 | 0.40793 |
Target: 5'- gGCGauUCGGGCgACgacGACCCCGAaaaacuCGCCa- -3' miRNA: 3'- -CGU--AGCCUG-UGa--CUGGGGCU------GCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 710 | 0.67 | 0.446267 |
Target: 5'- aGCcUUGGGCACcGA-CUCGACGCCg- -3' miRNA: 3'- -CGuAGCCUGUGaCUgGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 626 | 0.67 | 0.476297 |
Target: 5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3' miRNA: 3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 236 | 0.68 | 0.398672 |
Target: 5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3' miRNA: 3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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