Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 22366 | 0.66 | 0.528433 |
|
Target: 5'- aGCAUCGuGCuGCccGACUUCGACGCCg- -3' miRNA: 3'- -CGUAGCcUG-UGa-CUGGGGCUGCGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 7662 | 0.67 | 0.466173 |
|
Target: 5'- gGCAgaCGGACA--GACCCUGAC-CCUAc -3' miRNA: 3'- -CGUa-GCCUGUgaCUGGGGCUGcGGAU- -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 710 | 0.67 | 0.446267 |
|
Target: 5'- aGCcUUGGGCACcGA-CUCGACGCCg- -3' miRNA: 3'- -CGuAGCCUGUGaCUgGGGCUGCGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 6603 | 0.68 | 0.40793 |
|
Target: 5'- gGCGauUCGGGCgACgacGACCCCGAaaaacuCGCCa- -3' miRNA: 3'- -CGU--AGCCUG-UGa--CUGGGGCU------GCGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 29668 | 0.69 | 0.354456 |
|
Target: 5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3' miRNA: 3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 32937 | 0.69 | 0.337765 |
|
Target: 5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3' miRNA: 3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 34977 | 0.72 | 0.237083 |
|
Target: 5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3' miRNA: 3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 34661 | 0.73 | 0.186561 |
|
Target: 5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUgACuGGggCUGCGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 29154 | 0.79 | 0.075902 |
|
Target: 5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 12232 | 1.08 | 0.000477 |
|
Target: 5'- cGCAUCGGACACUGACCCCGACGCCUAc -3' miRNA: 3'- -CGUAGCCUGUGACUGGGGCUGCGGAU- -5' |
|||||||
| 26662 | 5' | -57.5 | NC_005808.1 | + | 35037 | 0.66 | 0.539123 |
|
Target: 5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3' miRNA: 3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home