Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26662 | 5' | -57.5 | NC_005808.1 | + | 37500 | 0.75 | 0.141777 |
Target: 5'- cGCAcCGGACGCUGGgCCgGcCGCCUGu -3' miRNA: 3'- -CGUaGCCUGUGACUgGGgCuGCGGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 34126 | 0.66 | 0.517822 |
Target: 5'- cGCGUCGGcugcgGCAUcGcaggccACCUCGACGCCg- -3' miRNA: 3'- -CGUAGCC-----UGUGaC------UGGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 7433 | 0.66 | 0.507297 |
Target: 5'- gGCGccCGGACACUu-CCUCGACGCg-- -3' miRNA: 3'- -CGUa-GCCUGUGAcuGGGGCUGCGgau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 27435 | 0.66 | 0.486529 |
Target: 5'- cGCGcccggCGGcCGCaGGCCCUGGCGCUg- -3' miRNA: 3'- -CGUa----GCCuGUGaCUGGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 30156 | 0.67 | 0.476297 |
Target: 5'- cGCGUCGGACAUcagcGGCagUUGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUGa---CUGg-GGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 626 | 0.67 | 0.476297 |
Target: 5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3' miRNA: 3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 17353 | 0.67 | 0.456161 |
Target: 5'- gGCAUCGGACACcaucGCCUgCGACagguauGCCUGc -3' miRNA: 3'- -CGUAGCCUGUGac--UGGG-GCUG------CGGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 32961 | 0.68 | 0.398672 |
Target: 5'- uGCGUCGauuacuGGCAa-GACCCgGACGCCa- -3' miRNA: 3'- -CGUAGC------CUGUgaCUGGGgCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 236 | 0.68 | 0.398672 |
Target: 5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3' miRNA: 3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 13472 | 0.69 | 0.329636 |
Target: 5'- gGUGUCGGGCA-UGACCUgggCGAUGCCg- -3' miRNA: 3'- -CGUAGCCUGUgACUGGG---GCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 36303 | 0.7 | 0.291172 |
Target: 5'- cGCAcCGGAgAUaaGCCCCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUgUGacUGGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 36648 | 0.7 | 0.283914 |
Target: 5'- cGCGcUGGACAaUGGCCCCGuguACGUCUGg -3' miRNA: 3'- -CGUaGCCUGUgACUGGGGC---UGCGGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 9070 | 0.7 | 0.283914 |
Target: 5'- gGUAUCGGGgugcauccccuCACUGGCCgCGAgGCCg- -3' miRNA: 3'- -CGUAGCCU-----------GUGACUGGgGCUgCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 24451 | 0.71 | 0.256312 |
Target: 5'- gGCcUCGGcgACAUUGACgCCGACGaCCUGc -3' miRNA: 3'- -CGuAGCC--UGUGACUGgGGCUGC-GGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 29668 | 0.69 | 0.354456 |
Target: 5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3' miRNA: 3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 32937 | 0.69 | 0.337765 |
Target: 5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3' miRNA: 3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 34977 | 0.72 | 0.237083 |
Target: 5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3' miRNA: 3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 34661 | 0.73 | 0.186561 |
Target: 5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUgACuGGggCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 29154 | 0.79 | 0.075902 |
Target: 5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5' |
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26662 | 5' | -57.5 | NC_005808.1 | + | 35037 | 0.66 | 0.539123 |
Target: 5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3' miRNA: 3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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