miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26662 5' -57.5 NC_005808.1 + 12232 1.08 0.000477
Target:  5'- cGCAUCGGACACUGACCCCGACGCCUAc -3'
miRNA:   3'- -CGUAGCCUGUGACUGGGGCUGCGGAU- -5'
26662 5' -57.5 NC_005808.1 + 29154 0.79 0.075902
Target:  5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3'
miRNA:   3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 37500 0.75 0.141777
Target:  5'- cGCAcCGGACGCUGGgCCgGcCGCCUGu -3'
miRNA:   3'- -CGUaGCCUGUGACUgGGgCuGCGGAU- -5'
26662 5' -57.5 NC_005808.1 + 34661 0.73 0.186561
Target:  5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3'
miRNA:   3'- -CGUAGCCUGUgACuGGggCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 34977 0.72 0.237083
Target:  5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3'
miRNA:   3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5'
26662 5' -57.5 NC_005808.1 + 24451 0.71 0.256312
Target:  5'- gGCcUCGGcgACAUUGACgCCGACGaCCUGc -3'
miRNA:   3'- -CGuAGCC--UGUGACUGgGGCUGC-GGAU- -5'
26662 5' -57.5 NC_005808.1 + 36648 0.7 0.283914
Target:  5'- cGCGcUGGACAaUGGCCCCGuguACGUCUGg -3'
miRNA:   3'- -CGUaGCCUGUgACUGGGGC---UGCGGAU- -5'
26662 5' -57.5 NC_005808.1 + 9070 0.7 0.283914
Target:  5'- gGUAUCGGGgugcauccccuCACUGGCCgCGAgGCCg- -3'
miRNA:   3'- -CGUAGCCU-----------GUGACUGGgGCUgCGGau -5'
26662 5' -57.5 NC_005808.1 + 36303 0.7 0.291172
Target:  5'- cGCAcCGGAgAUaaGCCCCGGCGCCc- -3'
miRNA:   3'- -CGUaGCCUgUGacUGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 13472 0.69 0.329636
Target:  5'- gGUGUCGGGCA-UGACCUgggCGAUGCCg- -3'
miRNA:   3'- -CGUAGCCUGUgACUGGG---GCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 32937 0.69 0.337765
Target:  5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3'
miRNA:   3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 29668 0.69 0.354456
Target:  5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3'
miRNA:   3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5'
26662 5' -57.5 NC_005808.1 + 236 0.68 0.398672
Target:  5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3'
miRNA:   3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5'
26662 5' -57.5 NC_005808.1 + 32961 0.68 0.398672
Target:  5'- uGCGUCGauuacuGGCAa-GACCCgGACGCCa- -3'
miRNA:   3'- -CGUAGC------CUGUgaCUGGGgCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 6603 0.68 0.40793
Target:  5'- gGCGauUCGGGCgACgacGACCCCGAaaaacuCGCCa- -3'
miRNA:   3'- -CGU--AGCCUG-UGa--CUGGGGCU------GCGGau -5'
26662 5' -57.5 NC_005808.1 + 710 0.67 0.446267
Target:  5'- aGCcUUGGGCACcGA-CUCGACGCCg- -3'
miRNA:   3'- -CGuAGCCUGUGaCUgGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 17353 0.67 0.456161
Target:  5'- gGCAUCGGACACcaucGCCUgCGACagguauGCCUGc -3'
miRNA:   3'- -CGUAGCCUGUGac--UGGG-GCUG------CGGAU- -5'
26662 5' -57.5 NC_005808.1 + 7662 0.67 0.466173
Target:  5'- gGCAgaCGGACA--GACCCUGAC-CCUAc -3'
miRNA:   3'- -CGUa-GCCUGUgaCUGGGGCUGcGGAU- -5'
26662 5' -57.5 NC_005808.1 + 626 0.67 0.476297
Target:  5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3'
miRNA:   3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 30156 0.67 0.476297
Target:  5'- cGCGUCGGACAUcagcGGCagUUGGCGCCa- -3'
miRNA:   3'- -CGUAGCCUGUGa---CUGg-GGCUGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.