miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26663 3' -59.2 NC_005808.1 + 597 0.68 0.364295
Target:  5'- uUGAUgGCCGccugcGGGUCGgccAGCAGCGCCg- -3'
miRNA:   3'- gGCUG-CGGC-----UCCAGC---UCGUCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 636 0.67 0.381553
Target:  5'- aCGGCGuCCGGcGUCGAGuCGGUGCC-Ca -3'
miRNA:   3'- gGCUGC-GGCUcCAGCUC-GUCGUGGaG- -5'
26663 3' -59.2 NC_005808.1 + 1351 0.68 0.347585
Target:  5'- gCGGCGgUGuGGgCGGGCAuCACCUCg -3'
miRNA:   3'- gGCUGCgGCuCCaGCUCGUcGUGGAG- -5'
26663 3' -59.2 NC_005808.1 + 2052 0.67 0.372857
Target:  5'- aCGGCGCgcaauuccuCGGGGUCGucgccCAGCACCa- -3'
miRNA:   3'- gGCUGCG---------GCUCCAGCuc---GUCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 2207 0.78 0.066317
Target:  5'- gCCGACGCCcucGUCGGGUAGCACCa- -3'
miRNA:   3'- -GGCUGCGGcucCAGCUCGUCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 2647 0.67 0.372857
Target:  5'- uCCGGCGCuugccgugCGAGGUCuuGCGGUACgcaUCg -3'
miRNA:   3'- -GGCUGCG--------GCUCCAGcuCGUCGUGg--AG- -5'
26663 3' -59.2 NC_005808.1 + 3167 0.77 0.090548
Target:  5'- aUGACGCCGcaucAGGUCGAGaCAGCACaagugCUCa -3'
miRNA:   3'- gGCUGCGGC----UCCAGCUC-GUCGUG-----GAG- -5'
26663 3' -59.2 NC_005808.1 + 4157 0.7 0.259025
Target:  5'- gCCGcccaccuugcGCGCCGuGGUCGAGguGUAgCCa- -3'
miRNA:   3'- -GGC----------UGCGGCuCCAGCUCguCGU-GGag -5'
26663 3' -59.2 NC_005808.1 + 7301 0.69 0.315834
Target:  5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5'
26663 3' -59.2 NC_005808.1 + 7339 0.69 0.315834
Target:  5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3'
miRNA:   3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5'
26663 3' -59.2 NC_005808.1 + 7701 0.73 0.166055
Target:  5'- gCCGGCGU--GGGUCGAGCcGCGCCc- -3'
miRNA:   3'- -GGCUGCGgcUCCAGCUCGuCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 8021 0.66 0.455782
Target:  5'- gCG-CGCCGAGGccaCGGGCAaGCugucggaaauCCUCg -3'
miRNA:   3'- gGCuGCGGCUCCa--GCUCGU-CGu---------GGAG- -5'
26663 3' -59.2 NC_005808.1 + 8625 0.75 0.113227
Target:  5'- aCGACGCCcaggauGAGGUCGAGC-GCgGCCUg -3'
miRNA:   3'- gGCUGCGG------CUCCAGCUCGuCG-UGGAg -5'
26663 3' -59.2 NC_005808.1 + 8745 0.79 0.059161
Target:  5'- aCCaACGCCGAGGUCGcGCGGCACg-- -3'
miRNA:   3'- -GGcUGCGGCUCCAGCuCGUCGUGgag -5'
26663 3' -59.2 NC_005808.1 + 8786 0.68 0.355871
Target:  5'- gCGGCGCaCGAugGGUCG-GCcGCGCCg- -3'
miRNA:   3'- gGCUGCG-GCU--CCAGCuCGuCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 9900 0.7 0.252541
Target:  5'- gCGugG-CGAuGUCGAGCuGCACUUCg -3'
miRNA:   3'- gGCugCgGCUcCAGCUCGuCGUGGAG- -5'
26663 3' -59.2 NC_005808.1 + 9905 0.66 0.446075
Target:  5'- aUCGACGCCGAaacCGAGguGCAgCg- -3'
miRNA:   3'- -GGCUGCGGCUccaGCUCguCGUgGag -5'
26663 3' -59.2 NC_005808.1 + 10069 0.66 0.436484
Target:  5'- uCCGAggcguCGUCGGGG-CGAGCcguGCcauCCUCg -3'
miRNA:   3'- -GGCU-----GCGGCUCCaGCUCGu--CGu--GGAG- -5'
26663 3' -59.2 NC_005808.1 + 10280 0.73 0.149034
Target:  5'- -gGAUGCCcuguAGGUCGucCAGCACCUCg -3'
miRNA:   3'- ggCUGCGGc---UCCAGCucGUCGUGGAG- -5'
26663 3' -59.2 NC_005808.1 + 10820 0.66 0.465603
Target:  5'- gCGG-GCCGAaGUCGAGC-GCGCCc- -3'
miRNA:   3'- gGCUgCGGCUcCAGCUCGuCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.