Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26663 | 3' | -59.2 | NC_005808.1 | + | 30281 | 0.68 | 0.355871 |
Target: 5'- gCGAguCGCCGGaaaacGUCGGGUAGCGCCc- -3' miRNA: 3'- gGCU--GCGGCUc----CAGCUCGUCGUGGag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 4157 | 0.7 | 0.259025 |
Target: 5'- gCCGcccaccuugcGCGCCGuGGUCGAGguGUAgCCa- -3' miRNA: 3'- -GGC----------UGCGGCuCCAGCUCguCGU-GGag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 32629 | 0.69 | 0.29349 |
Target: 5'- gCGACGCCGcGGUCGcuguccugucgaAGUucGGCGCCg- -3' miRNA: 3'- gGCUGCGGCuCCAGC------------UCG--UCGUGGag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 25719 | 0.68 | 0.321229 |
Target: 5'- cCCG-CGgCGGGGUCGucguccucaccggcGGCAGCACgCUg -3' miRNA: 3'- -GGCuGCgGCUCCAGC--------------UCGUCGUG-GAg -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 28472 | 0.68 | 0.323562 |
Target: 5'- gCCGuCGCCGuaguGGUCGAGCAuC-CgCUCg -3' miRNA: 3'- -GGCuGCGGCu---CCAGCUCGUcGuG-GAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 31907 | 0.68 | 0.323562 |
Target: 5'- aUCGAgGCCGAGuGccugcggcguuUCGAGC-GCugCUCg -3' miRNA: 3'- -GGCUgCGGCUC-C-----------AGCUCGuCGugGAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 34910 | 0.68 | 0.33143 |
Target: 5'- gCCGGcCGCCGAGGUCaAGCcGacgACCUg -3' miRNA: 3'- -GGCU-GCGGCUCCAGcUCGuCg--UGGAg -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 32346 | 0.68 | 0.347585 |
Target: 5'- aCCGcCGCCcAGGUCGcuGCGGuCGCCg- -3' miRNA: 3'- -GGCuGCGGcUCCAGCu-CGUC-GUGGag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 13119 | 0.68 | 0.355871 |
Target: 5'- uCCGGguUGCCGgccaggcguGGGUCGuucuGCAacuGCGCCUCg -3' miRNA: 3'- -GGCU--GCGGC---------UCCAGCu---CGU---CGUGGAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 22898 | 0.7 | 0.259025 |
Target: 5'- aCGACuGCUGcGaGUCGAGCAGUugCUg -3' miRNA: 3'- gGCUG-CGGCuC-CAGCUCGUCGugGAg -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 24596 | 0.7 | 0.259025 |
Target: 5'- uCCGGCguguccuuGCCGGGGUaggucAGCGGCACgUCg -3' miRNA: 3'- -GGCUG--------CGGCUCCAgc---UCGUCGUGgAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 9900 | 0.7 | 0.252541 |
Target: 5'- gCGugG-CGAuGUCGAGCuGCACUUCg -3' miRNA: 3'- gGCugCgGCUcCAGCUCGuCGUGGAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 35247 | 0.81 | 0.039552 |
Target: 5'- aCGACGCCGAGGUCGAGgCcGCGCUc- -3' miRNA: 3'- gGCUGCGGCUCCAGCUC-GuCGUGGag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 2207 | 0.78 | 0.066317 |
Target: 5'- gCCGACGCCcucGUCGGGUAGCACCa- -3' miRNA: 3'- -GGCUGCGGcucCAGCUCGUCGUGGag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 22296 | 0.77 | 0.083209 |
Target: 5'- aCGGCGUCGAaGUCGGGCAGCACg-- -3' miRNA: 3'- gGCUGCGGCUcCAGCUCGUCGUGgag -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 10280 | 0.73 | 0.149034 |
Target: 5'- -gGAUGCCcuguAGGUCGucCAGCACCUCg -3' miRNA: 3'- ggCUGCGGc---UCCAGCucGUCGUGGAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 25619 | 0.72 | 0.184801 |
Target: 5'- aCGGCGgCGcGGUCGccAGCAGCGCgUCc -3' miRNA: 3'- gGCUGCgGCuCCAGC--UCGUCGUGgAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 23707 | 0.72 | 0.189771 |
Target: 5'- gCCGguaGCGCCcAGGUCGcgGGcCAGUGCCUCg -3' miRNA: 3'- -GGC---UGCGGcUCCAGC--UC-GUCGUGGAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 38025 | 0.71 | 0.210839 |
Target: 5'- cCUGGCGCac----CGAGCAGCGCCUCg -3' miRNA: 3'- -GGCUGCGgcuccaGCUCGUCGUGGAG- -5' |
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26663 | 3' | -59.2 | NC_005808.1 | + | 18369 | 0.7 | 0.252541 |
Target: 5'- gCCGGCGgCGAGGUUG-GCcuugccgauGGCGCCg- -3' miRNA: 3'- -GGCUGCgGCUCCAGCuCG---------UCGUGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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