miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 3' -65.6 NC_005808.1 + 455 0.66 0.225643
Target:  5'- cUGCgCGGCCAGcuugcGGGCGCUgu-CGCGGu -3'
miRNA:   3'- uGCG-GCCGGUU-----CCCGCGGgucGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 465 0.67 0.184239
Target:  5'- cCGCCGuGCUgcugguGGGCGCCCuGgGCa- -3'
miRNA:   3'- uGCGGC-CGGuu----CCCGCGGGuCgCGcc -5'
26666 3' -65.6 NC_005808.1 + 613 0.66 0.214604
Target:  5'- -gGUCGGCCAgcAGcgccguggacacGGCGUCCGGCGuCGa -3'
miRNA:   3'- ugCGGCCGGU--UC------------CCGCGGGUCGC-GCc -5'
26666 3' -65.6 NC_005808.1 + 692 0.7 0.111498
Target:  5'- gGCGCCGGCC--GGGCcgcccaagauaccGCCCAGgauagggGCGGc -3'
miRNA:   3'- -UGCGGCCGGuuCCCG-------------CGGGUCg------CGCC- -5'
26666 3' -65.6 NC_005808.1 + 776 0.68 0.153664
Target:  5'- cCGCCccuauccugGGCgGuaucuuGGGCGCCCGGC-CGGc -3'
miRNA:   3'- uGCGG---------CCGgUu-----CCCGCGGGUCGcGCC- -5'
26666 3' -65.6 NC_005808.1 + 1303 0.67 0.189023
Target:  5'- cCGCCGcGCCcAGGGCgacggccaccagGCCgacaAGCGCGa -3'
miRNA:   3'- uGCGGC-CGGuUCCCG------------CGGg---UCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 1380 0.71 0.090088
Target:  5'- uUGUCGGCCuGGuGGCcgucGCCCugGGCGCGGc -3'
miRNA:   3'- uGCGGCCGGuUC-CCG----CGGG--UCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 1722 0.75 0.046553
Target:  5'- gUGCCGG-CGAGGGCGUCCAaguccuCGCGGg -3'
miRNA:   3'- uGCGGCCgGUUCCCGCGGGUc-----GCGCC- -5'
26666 3' -65.6 NC_005808.1 + 1765 0.7 0.09985
Target:  5'- cACGCCGGCCcacGGCGaauucucgacuaCCuGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGuucCCGCg-----------GGuCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 3784 0.67 0.166162
Target:  5'- gGCGUgaaCGGCac-GGGCGCCacgAGCGCGu -3'
miRNA:   3'- -UGCG---GCCGguuCCCGCGGg--UCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 3845 0.69 0.121138
Target:  5'- gGCGCUGGCUuucggcacgaccGAGGcuaCGUCCAGCgGCGGc -3'
miRNA:   3'- -UGCGGCCGG------------UUCCc--GCGGGUCG-CGCC- -5'
26666 3' -65.6 NC_005808.1 + 4016 0.72 0.070462
Target:  5'- cGCGCCGGCCAccaGCGUCaugccGCGCGGg -3'
miRNA:   3'- -UGCGGCCGGUuccCGCGGgu---CGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 4170 0.7 0.097188
Target:  5'- cGCGCCGuggucgagguguaGCCAGuGGGCGCCgaaaaguuggaauCGGCGCGc -3'
miRNA:   3'- -UGCGGC-------------CGGUU-CCCGCGG-------------GUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 4430 0.69 0.131198
Target:  5'- gUGCCGcGCCAGGGGgaaGCCgcCAGCgGUGGc -3'
miRNA:   3'- uGCGGC-CGGUUCCCg--CGG--GUCG-CGCC- -5'
26666 3' -65.6 NC_005808.1 + 4745 0.67 0.179563
Target:  5'- uCGCCGGCUAuccGGCGCgCUGGUGCc- -3'
miRNA:   3'- uGCGGCCGGUuc-CCGCG-GGUCGCGcc -5'
26666 3' -65.6 NC_005808.1 + 4855 0.67 0.189023
Target:  5'- aGCGCCaGCCGGcgugcuGGGCGC--AGUGUGGg -3'
miRNA:   3'- -UGCGGcCGGUU------CCCGCGggUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 4863 0.72 0.072421
Target:  5'- uGC-CCGGUCAGGucguUGCCCAGCGCGGc -3'
miRNA:   3'- -UGcGGCCGGUUCcc--GCGGGUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 5527 0.7 0.111798
Target:  5'- cACGCCGGCCGcccAGGuucCGCCCAGguCGCc- -3'
miRNA:   3'- -UGCGGCCGGU---UCCc--GCGGGUC--GCGcc -5'
26666 3' -65.6 NC_005808.1 + 6232 0.68 0.149692
Target:  5'- -gGCCcGCUAAGGGUGCCC-GUGCc- -3'
miRNA:   3'- ugCGGcCGGUUCCCGCGGGuCGCGcc -5'
26666 3' -65.6 NC_005808.1 + 6700 0.67 0.179563
Target:  5'- cACuCCGGCCAAGcGCGCgaagCUGGCgGCGGa -3'
miRNA:   3'- -UGcGGCCGGUUCcCGCG----GGUCG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.