miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 3' -65.6 NC_005808.1 + 8858 0.69 0.121138
Target:  5'- cGCGuuGGCCucGGuCGCCacgaagcgGGCGCGGg -3'
miRNA:   3'- -UGCggCCGGuuCCcGCGGg-------UCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 15140 0.7 0.100391
Target:  5'- cAUGCUGGCgGcGGauGCGCCCAGgGCGa -3'
miRNA:   3'- -UGCGGCCGgUuCC--CGCGGGUCgCGCc -5'
26666 3' -65.6 NC_005808.1 + 31027 0.7 0.10595
Target:  5'- uUGCCGGCCGAGGcaaucGCGCgggCCAacguGCGCGa -3'
miRNA:   3'- uGCGGCCGGUUCC-----CGCG---GGU----CGCGCc -5'
26666 3' -65.6 NC_005808.1 + 18042 0.7 0.108837
Target:  5'- -gGCgGGCUgcuuGGGGGCcuuaCCGGCGCGGg -3'
miRNA:   3'- ugCGgCCGG----UUCCCGcg--GGUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 692 0.7 0.111498
Target:  5'- gGCGCCGGCC--GGGCcgcccaagauaccGCCCAGgauagggGCGGc -3'
miRNA:   3'- -UGCGGCCGGuuCCCG-------------CGGGUCg------CGCC- -5'
26666 3' -65.6 NC_005808.1 + 5527 0.7 0.111798
Target:  5'- cACGCCGGCCGcccAGGuucCGCCCAGguCGCc- -3'
miRNA:   3'- -UGCGGCCGGU---UCCc--GCGGGUC--GCGcc -5'
26666 3' -65.6 NC_005808.1 + 7080 0.69 0.114834
Target:  5'- gACGCCgcGGCCuacccacGGcGCGCCCAcGCGCa- -3'
miRNA:   3'- -UGCGG--CCGGuu-----CC-CGCGGGU-CGCGcc -5'
26666 3' -65.6 NC_005808.1 + 8996 0.69 0.114834
Target:  5'- uCGCC-GCgCGGGGGCGCuuCCAGCagGCGGc -3'
miRNA:   3'- uGCGGcCG-GUUCCCGCG--GGUCG--CGCC- -5'
26666 3' -65.6 NC_005808.1 + 40731 0.69 0.114834
Target:  5'- aGCGCCGGCCAcGGGCugaaCCuGCaagacgGCGGc -3'
miRNA:   3'- -UGCGGCCGGUuCCCGcg--GGuCG------CGCC- -5'
26666 3' -65.6 NC_005808.1 + 4170 0.7 0.097188
Target:  5'- cGCGCCGuggucgagguguaGCCAGuGGGCGCCgaaaaguuggaauCGGCGCGc -3'
miRNA:   3'- -UGCGGC-------------CGGUU-CCCGCGG-------------GUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 28560 0.71 0.091071
Target:  5'- cCGCCGGCCAucgcGGcGCGCacgucggccaccggCAGCGUGGu -3'
miRNA:   3'- uGCGGCCGGUu---CC-CGCGg-------------GUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 23698 0.71 0.087674
Target:  5'- cACGUacaGGCCGGuaGCGCCCAGguCGCGGg -3'
miRNA:   3'- -UGCGg--CCGGUUccCGCGGGUC--GCGCC- -5'
26666 3' -65.6 NC_005808.1 + 24576 0.74 0.049212
Target:  5'- -gGCCGGCCAcggucGGGcCGUCCGGCGUGu -3'
miRNA:   3'- ugCGGCCGGUu----CCC-GCGGGUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 35182 0.73 0.058108
Target:  5'- -gGCCGGCCAuccGGUGCCCGGCuucaagcugGUGGa -3'
miRNA:   3'- ugCGGCCGGUuc-CCGCGGGUCG---------CGCC- -5'
26666 3' -65.6 NC_005808.1 + 13174 0.73 0.064885
Target:  5'- gUGUCGGCCGcgcuGGGCGCCCuuGGC-CGGc -3'
miRNA:   3'- uGCGGCCGGUu---CCCGCGGG--UCGcGCC- -5'
26666 3' -65.6 NC_005808.1 + 23435 0.72 0.069501
Target:  5'- gACGCCGGCCGGGaugcggaugguucGCGCguacacgCCGGCGUGGa -3'
miRNA:   3'- -UGCGGCCGGUUCc------------CGCG-------GGUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 4016 0.72 0.070462
Target:  5'- cGCGCCGGCCAccaGCGUCaugccGCGCGGg -3'
miRNA:   3'- -UGCGGCCGGUuccCGCGGgu---CGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 4863 0.72 0.072421
Target:  5'- uGC-CCGGUCAGGucguUGCCCAGCGCGGc -3'
miRNA:   3'- -UGcGGCCGGUUCcc--GCGGGUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 31193 0.72 0.073622
Target:  5'- cGCGCacguucugccugaCGGUCGAGGGCGaaagcaugaagaacCCCGGCGCGcGg -3'
miRNA:   3'- -UGCG-------------GCCGGUUCCCGC--------------GGGUCGCGC-C- -5'
26666 3' -65.6 NC_005808.1 + 7909 0.71 0.080795
Target:  5'- uUGCCucccaucuuGCCGAGGGCGaacaCCGGCGCGa -3'
miRNA:   3'- uGCGGc--------CGGUUCCCGCg---GGUCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.