miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 5' -55.8 NC_005808.1 + 829 0.66 0.618112
Target:  5'- uGCCGaACGUCGgccAGGUggGCAGguuggUGUAGAa -3'
miRNA:   3'- cCGGC-UGUAGC---UCCG--CGUCa----ACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 885 0.66 0.584696
Target:  5'- uGGCCGACGuUCGgcaagggcuGGGCGCGGc-GCGu- -3'
miRNA:   3'- -CCGGCUGU-AGC---------UCCGCGUCaaCGUcu -5'
26666 5' -55.8 NC_005808.1 + 1329 0.68 0.456766
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26666 5' -55.8 NC_005808.1 + 2436 0.7 0.362562
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26666 5' -55.8 NC_005808.1 + 4172 0.74 0.223356
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 4849 0.71 0.320786
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 6371 0.67 0.519185
Target:  5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3'
miRNA:   3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5'
26666 5' -55.8 NC_005808.1 + 6739 0.67 0.529928
Target:  5'- cGGCCuGaACAUCGGcguGGCGCAGaccaugagcGCGGAc -3'
miRNA:   3'- -CCGG-C-UGUAGCU---CCGCGUCaa-------CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 7303 0.75 0.189935
Target:  5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3'
miRNA:   3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 8127 0.66 0.584696
Target:  5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 8240 0.68 0.477147
Target:  5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3'
miRNA:   3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 9047 0.67 0.529928
Target:  5'- cGCgCGGCGaggaaaUCGAGGCGCuuaccgacgUGCGGAu -3'
miRNA:   3'- cCG-GCUGU------AGCUCCGCGuca------ACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 9248 0.7 0.371358
Target:  5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3'
miRNA:   3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5'
26666 5' -55.8 NC_005808.1 + 10818 0.66 0.606948
Target:  5'- gGGCCGAaGUCGAGcGCGCccuuGgcgaGCAGc -3'
miRNA:   3'- -CCGGCUgUAGCUC-CGCGu---Caa--CGUCu -5'
26666 5' -55.8 NC_005808.1 + 10867 0.66 0.584696
Target:  5'- aGCCG-CGcCGAGGCGCAGcaguacaUGCAa- -3'
miRNA:   3'- cCGGCuGUaGCUCCGCGUCa------ACGUcu -5'
26666 5' -55.8 NC_005808.1 + 11600 0.71 0.328845
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 13215 1.11 0.000454
Target:  5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3'
miRNA:   3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 13311 0.75 0.184811
Target:  5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3'
miRNA:   3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 13595 0.69 0.417466
Target:  5'- cGGCCGACAguucGGCGCGGacgGCAa- -3'
miRNA:   3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5'
26666 5' -55.8 NC_005808.1 + 14775 0.7 0.353912
Target:  5'- gGGCgcagGGCAUgGAGGCGCAacUGCAGGc -3'
miRNA:   3'- -CCGg---CUGUAgCUCCGCGUcaACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.