miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 5' -55.8 NC_005808.1 + 23560 0.78 0.111519
Target:  5'- cGGCCGACAUCGccggcAGGUGCGG--GCGGGg -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGUCaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 829 0.66 0.618112
Target:  5'- uGCCGaACGUCGgccAGGUggGCAGguuggUGUAGAa -3'
miRNA:   3'- cCGGC-UGUAGC---UCCG--CGUCa----ACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 36522 0.66 0.595806
Target:  5'- cGCuCGACGacuUCGAGGCGguGUgaugaGCAc- -3'
miRNA:   3'- cCG-GCUGU---AGCUCCGCguCAa----CGUcu -5'
26666 5' -55.8 NC_005808.1 + 17449 0.66 0.584696
Target:  5'- cGCCaGCAUCGAGGC-CAGgUGCc-- -3'
miRNA:   3'- cCGGcUGUAGCUCCGcGUCaACGucu -5'
26666 5' -55.8 NC_005808.1 + 8127 0.66 0.584696
Target:  5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 19634 0.66 0.584696
Target:  5'- gGGCCgcGACAUCGGccaGCGUcgGGUUGguGGu -3'
miRNA:   3'- -CCGG--CUGUAGCUc--CGCG--UCAACguCU- -5'
26666 5' -55.8 NC_005808.1 + 6371 0.67 0.519185
Target:  5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3'
miRNA:   3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5'
26666 5' -55.8 NC_005808.1 + 29263 0.68 0.50853
Target:  5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3'
miRNA:   3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 16595 0.68 0.486464
Target:  5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3'
miRNA:   3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5'
26666 5' -55.8 NC_005808.1 + 1329 0.68 0.456766
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26666 5' -55.8 NC_005808.1 + 13311 0.75 0.184811
Target:  5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3'
miRNA:   3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 4172 0.74 0.223356
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 11600 0.71 0.328845
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 35349 0.7 0.353912
Target:  5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3'
miRNA:   3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 2436 0.7 0.362562
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26666 5' -55.8 NC_005808.1 + 39331 0.69 0.436862
Target:  5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3'
miRNA:   3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5'
26666 5' -55.8 NC_005808.1 + 23330 0.66 0.63376
Target:  5'- cGCCGACAccgaccugaccaugcUguuccccagCGAGGCGCGGUcGguGGc -3'
miRNA:   3'- cCGGCUGU---------------A---------GCUCCGCGUCAaCguCU- -5'
26666 5' -55.8 NC_005808.1 + 34847 0.77 0.139968
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26666 5' -55.8 NC_005808.1 + 7303 0.75 0.189935
Target:  5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3'
miRNA:   3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 4849 0.71 0.320786
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.