Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26667 | 5' | -51.2 | NC_005808.1 | + | 24524 | 0.68 | 0.759795 |
Target: 5'- aGCAggucGUCGGCGUcaau-GuCGCCGAGGc -3' miRNA: 3'- -CGU----UAGCCGCGacuuuCuGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 8125 | 0.68 | 0.770414 |
Target: 5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3' miRNA: 3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 32718 | 0.68 | 0.770414 |
Target: 5'- uGCAAUCaGGCGaUGGAGggcuGACGCCAu-- -3' miRNA: 3'- -CGUUAG-CCGCgACUUU----CUGCGGUucc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 19141 | 0.68 | 0.774619 |
Target: 5'- uGCAAucgcgugaccUCGGCgaggacacGCUGAucGACGCCGccggcggccgcuaccAGGg -3' miRNA: 3'- -CGUU----------AGCCG--------CGACUuuCUGCGGU---------------UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 1465 | 0.68 | 0.780878 |
Target: 5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3' miRNA: 3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 36400 | 0.68 | 0.780879 |
Target: 5'- gGCGuugucUCGGUGUguucgcuuUGGcuGGGGCGCCGGGGc -3' miRNA: 3'- -CGUu----AGCCGCG--------ACU--UUCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 29675 | 0.67 | 0.791174 |
Target: 5'- aGCGccCGGCGCUGGAcaacuGGcaaaccgcGCGCCuGGGc -3' miRNA: 3'- -CGUuaGCCGCGACUU-----UC--------UGCGGuUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 2136 | 0.67 | 0.791174 |
Target: 5'- aCAucgUGGUGCUGGgcGACGaccCCGAGGa -3' miRNA: 3'- cGUua-GCCGCGACUuuCUGC---GGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 34585 | 0.67 | 0.791174 |
Target: 5'- ----cCGGCGaaGcu-GGCGCCAAGGg -3' miRNA: 3'- cguuaGCCGCgaCuuuCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 26555 | 0.67 | 0.795243 |
Target: 5'- uGCgAGUCGGCgaggaucacccgaauGCcaaacUGAcGGAUGCCGAGGu -3' miRNA: 3'- -CG-UUAGCCG---------------CG-----ACUuUCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 23804 | 0.67 | 0.811213 |
Target: 5'- gGCA--UGGCGCUGcuGcGCGCCAccgAGGc -3' miRNA: 3'- -CGUuaGCCGCGACuuUcUGCGGU---UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 13823 | 0.67 | 0.811213 |
Target: 5'- cGCucauGUCGGCGCUGGAAcaaaacaacccGACcuauGCCucGGc -3' miRNA: 3'- -CGu---UAGCCGCGACUUU-----------CUG----CGGuuCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 27528 | 0.67 | 0.81997 |
Target: 5'- cGUGcgCGGCGCgcu-GGcauaccaGCGCCAGGGc -3' miRNA: 3'- -CGUuaGCCGCGacuuUC-------UGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 15881 | 0.67 | 0.820932 |
Target: 5'- -gAGUCcuGCGCggu-GGugGCCGAGGg -3' miRNA: 3'- cgUUAGc-CGCGacuuUCugCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 24220 | 0.67 | 0.820932 |
Target: 5'- cGCAgccGUCgaGGCGCUGGGccAGGCGCgCAGccGGc -3' miRNA: 3'- -CGU---UAG--CCGCGACUU--UCUGCG-GUU--CC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 30172 | 0.67 | 0.829494 |
Target: 5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3' miRNA: 3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 15259 | 0.67 | 0.830435 |
Target: 5'- cGCcAUCGGCGCauagGAGAaaAUGCCAugucAGGa -3' miRNA: 3'- -CGuUAGCCGCGa---CUUUc-UGCGGU----UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 32217 | 0.66 | 0.83971 |
Target: 5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3' miRNA: 3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 14053 | 0.66 | 0.83971 |
Target: 5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3' miRNA: 3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 14913 | 0.66 | 0.83971 |
Target: 5'- aGCGugCGGCGCUGGc---CGCCAAcGGc -3' miRNA: 3'- -CGUuaGCCGCGACUuucuGCGGUU-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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