miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 5' -51.2 NC_005808.1 + 20181 0.66 0.874344
Target:  5'- gGCAuUCGacgacgguGUGCUGGgcgccuuuuccgAAGuCGCCAAGGa -3'
miRNA:   3'- -CGUuAGC--------CGCGACU------------UUCuGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 23299 0.73 0.490522
Target:  5'- aGCGA--GGCGCgGucGGugGCCGAGGc -3'
miRNA:   3'- -CGUUagCCGCGaCuuUCugCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 23804 0.67 0.811213
Target:  5'- gGCA--UGGCGCUGcuGcGCGCCAccgAGGc -3'
miRNA:   3'- -CGUuaGCCGCGACuuUcUGCGGU---UCC- -5'
26667 5' -51.2 NC_005808.1 + 24220 0.67 0.820932
Target:  5'- cGCAgccGUCgaGGCGCUGGGccAGGCGCgCAGccGGc -3'
miRNA:   3'- -CGU---UAG--CCGCGACUU--UCUGCG-GUU--CC- -5'
26667 5' -51.2 NC_005808.1 + 24524 0.68 0.759795
Target:  5'- aGCAggucGUCGGCGUcaau-GuCGCCGAGGc -3'
miRNA:   3'- -CGU----UAGCCGCGacuuuCuGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 24574 0.7 0.636443
Target:  5'- cGUGAUCGGCGU----GGGCGCCAGc- -3'
miRNA:   3'- -CGUUAGCCGCGacuuUCUGCGGUUcc -5'
26667 5' -51.2 NC_005808.1 + 26286 0.66 0.88234
Target:  5'- cGCGcAUCGcGCGC-GAuGGAUGCCAucaacGGa -3'
miRNA:   3'- -CGU-UAGC-CGCGaCUuUCUGCGGUu----CC- -5'
26667 5' -51.2 NC_005808.1 + 26555 0.67 0.795243
Target:  5'- uGCgAGUCGGCgaggaucacccgaauGCcaaacUGAcGGAUGCCGAGGu -3'
miRNA:   3'- -CG-UUAGCCG---------------CG-----ACUuUCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 27221 0.66 0.83971
Target:  5'- cGCGugCGGCGCgUGggGGACuUCGAGu -3'
miRNA:   3'- -CGUuaGCCGCG-ACuuUCUGcGGUUCc -5'
26667 5' -51.2 NC_005808.1 + 27376 0.68 0.738144
Target:  5'- cGCGccuGUgGGCGUcgugGGAAGccuuCGCCAAGGc -3'
miRNA:   3'- -CGU---UAgCCGCGa---CUUUCu---GCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 27528 0.67 0.81997
Target:  5'- cGUGcgCGGCGCgcu-GGcauaccaGCGCCAGGGc -3'
miRNA:   3'- -CGUuaGCCGCGacuuUC-------UGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 27904 0.71 0.56787
Target:  5'- aGCAG-CGGCGC-GGccGGCGCCAccgcGGGc -3'
miRNA:   3'- -CGUUaGCCGCGaCUuuCUGCGGU----UCC- -5'
26667 5' -51.2 NC_005808.1 + 28005 0.71 0.56787
Target:  5'- cCGAUgaGGCGCUGGAAGAaGCCGAu- -3'
miRNA:   3'- cGUUAg-CCGCGACUUUCUgCGGUUcc -5'
26667 5' -51.2 NC_005808.1 + 28282 0.66 0.866074
Target:  5'- cGCGuggucGUCGGCGUggccgaccUGGAcaAGGCGCCGcaccugcuGGGc -3'
miRNA:   3'- -CGU-----UAGCCGCG--------ACUU--UCUGCGGU--------UCC- -5'
26667 5' -51.2 NC_005808.1 + 28456 0.66 0.874344
Target:  5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3'
miRNA:   3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 28811 0.74 0.408662
Target:  5'- aGCGcaCcGCGCUGGAcGAUGCCAAGGc -3'
miRNA:   3'- -CGUuaGcCGCGACUUuCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 29675 0.67 0.791174
Target:  5'- aGCGccCGGCGCUGGAcaacuGGcaaaccgcGCGCCuGGGc -3'
miRNA:   3'- -CGUuaGCCGCGACUU-----UC--------UGCGGuUCC- -5'
26667 5' -51.2 NC_005808.1 + 30172 0.67 0.829494
Target:  5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3'
miRNA:   3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5'
26667 5' -51.2 NC_005808.1 + 30480 0.66 0.866074
Target:  5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3'
miRNA:   3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 32217 0.66 0.83971
Target:  5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3'
miRNA:   3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.