miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 5' -51.2 NC_005808.1 + 1465 0.68 0.780878
Target:  5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3'
miRNA:   3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 2136 0.67 0.791174
Target:  5'- aCAucgUGGUGCUGGgcGACGaccCCGAGGa -3'
miRNA:   3'- cGUua-GCCGCGACUuuCUGC---GGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 3481 0.71 0.602032
Target:  5'- aGUAG-CGGgGCcGAAAGGCcccGCCAAGGc -3'
miRNA:   3'- -CGUUaGCCgCGaCUUUCUG---CGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 3922 0.7 0.64792
Target:  5'- aGCGA-CGGCGcCUGGuacaacuuCGCCGAGGu -3'
miRNA:   3'- -CGUUaGCCGC-GACUuucu----GCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 8123 0.66 0.866074
Target:  5'- aGCGAccUgGGCGCgcgucaUGGAcGGCGgCAAGGa -3'
miRNA:   3'- -CGUU--AgCCGCG------ACUUuCUGCgGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 8125 0.68 0.770414
Target:  5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3'
miRNA:   3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5'
26667 5' -51.2 NC_005808.1 + 10535 0.71 0.613488
Target:  5'- ----cCGGUGCUGcgcgacuuccagGgcGACGCCAAGGg -3'
miRNA:   3'- cguuaGCCGCGAC------------UuuCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 10767 0.68 0.737048
Target:  5'- aGCAAUCGGCcgaggccgugcgcGCUGccgucAAGACGCacuGGa -3'
miRNA:   3'- -CGUUAGCCG-------------CGACu----UUCUGCGguuCC- -5'
26667 5' -51.2 NC_005808.1 + 11270 0.7 0.670814
Target:  5'- cGCug-CGGCGCUG--GGACGCuCGgccAGGu -3'
miRNA:   3'- -CGuuaGCCGCGACuuUCUGCG-GU---UCC- -5'
26667 5' -51.2 NC_005808.1 + 13344 1.14 0.00096
Target:  5'- uGCAAUCGGCGCUGAAAGACGCCAAGGa -3'
miRNA:   3'- -CGUUAGCCGCGACUUUCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 13823 0.67 0.811213
Target:  5'- cGCucauGUCGGCGCUGGAAcaaaacaacccGACcuauGCCucGGc -3'
miRNA:   3'- -CGu---UAGCCGCGACUUU-----------CUG----CGGuuCC- -5'
26667 5' -51.2 NC_005808.1 + 14053 0.66 0.83971
Target:  5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3'
miRNA:   3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5'
26667 5' -51.2 NC_005808.1 + 14913 0.66 0.83971
Target:  5'- aGCGugCGGCGCUGGc---CGCCAAcGGc -3'
miRNA:   3'- -CGUuaGCCGCGACUuucuGCGGUU-CC- -5'
26667 5' -51.2 NC_005808.1 + 15259 0.67 0.830435
Target:  5'- cGCcAUCGGCGCauagGAGAaaAUGCCAugucAGGa -3'
miRNA:   3'- -CGuUAGCCGCGa---CUUUc-UGCGGU----UCC- -5'
26667 5' -51.2 NC_005808.1 + 15620 0.66 0.874344
Target:  5'- ----aCGGCGCcauUGAccuGGACGUgGAGGc -3'
miRNA:   3'- cguuaGCCGCG---ACUu--UCUGCGgUUCC- -5'
26667 5' -51.2 NC_005808.1 + 15881 0.67 0.820932
Target:  5'- -gAGUCcuGCGCggu-GGugGCCGAGGg -3'
miRNA:   3'- cgUUAGc-CGCGacuuUCugCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 16439 0.66 0.874343
Target:  5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3'
miRNA:   3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5'
26667 5' -51.2 NC_005808.1 + 17129 0.66 0.83971
Target:  5'- cGCcuUCGuGCGCgaggUGAAGGAUucgGCCAAGa -3'
miRNA:   3'- -CGuuAGC-CGCG----ACUUUCUG---CGGUUCc -5'
26667 5' -51.2 NC_005808.1 + 19141 0.68 0.774619
Target:  5'- uGCAAucgcgugaccUCGGCgaggacacGCUGAucGACGCCGccggcggccgcuaccAGGg -3'
miRNA:   3'- -CGUU----------AGCCG--------CGACUuuCUGCGGU---------------UCC- -5'
26667 5' -51.2 NC_005808.1 + 19324 0.66 0.857539
Target:  5'- uCGAUgaaGGCGCggucuucgGAcAGGCGCCAGGcGg -3'
miRNA:   3'- cGUUAg--CCGCGa-------CUuUCUGCGGUUC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.