miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 5' -51.2 NC_005808.1 + 38561 0.66 0.874344
Target:  5'- gGUGggCGGCGCUGAAuu-CGUCGcGGu -3'
miRNA:   3'- -CGUuaGCCGCGACUUucuGCGGUuCC- -5'
26667 5' -51.2 NC_005808.1 + 37581 0.78 0.238745
Target:  5'- gGCAucgCGGCGCUGAAAGcggacuGCGCCGAc- -3'
miRNA:   3'- -CGUua-GCCGCGACUUUC------UGCGGUUcc -5'
26667 5' -51.2 NC_005808.1 + 37324 0.7 0.624962
Target:  5'- aGCAAUCGaCGCUGGAAcGACGCa---- -3'
miRNA:   3'- -CGUUAGCcGCGACUUU-CUGCGguucc -5'
26667 5' -51.2 NC_005808.1 + 36400 0.68 0.780879
Target:  5'- gGCGuugucUCGGUGUguucgcuuUGGcuGGGGCGCCGGGGc -3'
miRNA:   3'- -CGUu----AGCCGCG--------ACU--UUCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 36038 0.7 0.636443
Target:  5'- gGCGcgUGGCGCUGcgcgcGGACacguacagguuGCCGGGGa -3'
miRNA:   3'- -CGUuaGCCGCGACuu---UCUG-----------CGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 35812 0.79 0.216353
Target:  5'- cGCAAgucaaGGCGCUGAAccaggccaucgagcaGGuCGCCAAGGa -3'
miRNA:   3'- -CGUUag---CCGCGACUU---------------UCuGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 35225 0.72 0.545364
Target:  5'- cGCGGUgccCGcCGCUGGAcgaacGACGCCGAGGu -3'
miRNA:   3'- -CGUUA---GCcGCGACUUu----CUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 34665 0.66 0.857539
Target:  5'- gGCcg-UGGCG-UGAAgguGGACGCCGAGc -3'
miRNA:   3'- -CGuuaGCCGCgACUU---UCUGCGGUUCc -5'
26667 5' -51.2 NC_005808.1 + 34585 0.67 0.791174
Target:  5'- ----cCGGCGaaGcu-GGCGCCAAGGg -3'
miRNA:   3'- cguuaGCCGCgaCuuuCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 34225 0.73 0.490522
Target:  5'- cGCGgaacAUCGGCGCgauGucGGCGUCGAGGu -3'
miRNA:   3'- -CGU----UAGCCGCGac-UuuCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 32866 0.68 0.737048
Target:  5'- aCGGUCGGCGCcGAGAuugucGCGCCcgacuggAAGGa -3'
miRNA:   3'- cGUUAGCCGCGaCUUUc----UGCGG-------UUCC- -5'
26667 5' -51.2 NC_005808.1 + 32718 0.68 0.770414
Target:  5'- uGCAAUCaGGCGaUGGAGggcuGACGCCAu-- -3'
miRNA:   3'- -CGUUAG-CCGCgACUUU----CUGCGGUucc -5'
26667 5' -51.2 NC_005808.1 + 32464 0.69 0.703702
Target:  5'- cGCGGcuuuuuuUCGGUGCUGGcuuccugcuGGGCGgCCGGGGc -3'
miRNA:   3'- -CGUU-------AGCCGCGACUu--------UCUGC-GGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 32217 0.66 0.83971
Target:  5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3'
miRNA:   3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 30480 0.66 0.866074
Target:  5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3'
miRNA:   3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 30172 0.67 0.829494
Target:  5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3'
miRNA:   3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5'
26667 5' -51.2 NC_005808.1 + 29675 0.67 0.791174
Target:  5'- aGCGccCGGCGCUGGAcaacuGGcaaaccgcGCGCCuGGGc -3'
miRNA:   3'- -CGUuaGCCGCGACUU-----UC--------UGCGGuUCC- -5'
26667 5' -51.2 NC_005808.1 + 28811 0.74 0.408662
Target:  5'- aGCGcaCcGCGCUGGAcGAUGCCAAGGc -3'
miRNA:   3'- -CGUuaGcCGCGACUUuCUGCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 28456 0.66 0.874344
Target:  5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3'
miRNA:   3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5'
26667 5' -51.2 NC_005808.1 + 28282 0.66 0.866074
Target:  5'- cGCGuggucGUCGGCGUggccgaccUGGAcaAGGCGCCGcaccugcuGGGc -3'
miRNA:   3'- -CGU-----UAGCCGCG--------ACUU--UCUGCGGU--------UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.