Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26667 | 5' | -51.2 | NC_005808.1 | + | 35812 | 0.79 | 0.216353 |
Target: 5'- cGCAAgucaaGGCGCUGAAccaggccaucgagcaGGuCGCCAAGGa -3' miRNA: 3'- -CGUUag---CCGCGACUU---------------UCuGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 26286 | 0.66 | 0.88234 |
Target: 5'- cGCGcAUCGcGCGC-GAuGGAUGCCAucaacGGa -3' miRNA: 3'- -CGU-UAGC-CGCGaCUuUCUGCGGUu----CC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 16439 | 0.66 | 0.874343 |
Target: 5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3' miRNA: 3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 30480 | 0.66 | 0.866074 |
Target: 5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3' miRNA: 3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 19324 | 0.66 | 0.857539 |
Target: 5'- uCGAUgaaGGCGCggucuucgGAcAGGCGCCAGGcGg -3' miRNA: 3'- cGUUAg--CCGCGa-------CUuUCUGCGGUUC-C- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 34665 | 0.66 | 0.857539 |
Target: 5'- gGCcg-UGGCG-UGAAgguGGACGCCGAGc -3' miRNA: 3'- -CGuuaGCCGCgACUU---UCUGCGGUUCc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 14053 | 0.66 | 0.83971 |
Target: 5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3' miRNA: 3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 30172 | 0.67 | 0.829494 |
Target: 5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3' miRNA: 3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 34585 | 0.67 | 0.791174 |
Target: 5'- ----cCGGCGaaGcu-GGCGCCAAGGg -3' miRNA: 3'- cguuaGCCGCgaCuuuCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 1465 | 0.68 | 0.780878 |
Target: 5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3' miRNA: 3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 32718 | 0.68 | 0.770414 |
Target: 5'- uGCAAUCaGGCGaUGGAGggcuGACGCCAu-- -3' miRNA: 3'- -CGUUAG-CCGCgACUUU----CUGCGGUucc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 37581 | 0.78 | 0.238745 |
Target: 5'- gGCAucgCGGCGCUGAAAGcggacuGCGCCGAc- -3' miRNA: 3'- -CGUua-GCCGCGACUUUC------UGCGGUUcc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 35225 | 0.72 | 0.545364 |
Target: 5'- cGCGGUgccCGcCGCUGGAcgaacGACGCCGAGGu -3' miRNA: 3'- -CGUUA---GCcGCGACUUu----CUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 28005 | 0.71 | 0.56787 |
Target: 5'- cCGAUgaGGCGCUGGAAGAaGCCGAu- -3' miRNA: 3'- cGUUAg-CCGCGACUUUCUgCGGUUcc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 37324 | 0.7 | 0.624962 |
Target: 5'- aGCAAUCGaCGCUGGAAcGACGCa---- -3' miRNA: 3'- -CGUUAGCcGCGACUUU-CUGCGguucc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 11270 | 0.7 | 0.670814 |
Target: 5'- cGCug-CGGCGCUG--GGACGCuCGgccAGGu -3' miRNA: 3'- -CGuuaGCCGCGACuuUCUGCG-GU---UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 32866 | 0.68 | 0.737048 |
Target: 5'- aCGGUCGGCGCcGAGAuugucGCGCCcgacuggAAGGa -3' miRNA: 3'- cGUUAGCCGCGaCUUUc----UGCGG-------UUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 8125 | 0.68 | 0.770414 |
Target: 5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3' miRNA: 3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 28456 | 0.66 | 0.874344 |
Target: 5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3' miRNA: 3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 28811 | 0.74 | 0.408662 |
Target: 5'- aGCGcaCcGCGCUGGAcGAUGCCAAGGc -3' miRNA: 3'- -CGUuaGcCGCGACUUuCUGCGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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