Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26667 | 5' | -51.2 | NC_005808.1 | + | 34225 | 0.73 | 0.490522 |
Target: 5'- cGCGgaacAUCGGCGCgauGucGGCGUCGAGGu -3' miRNA: 3'- -CGU----UAGCCGCGac-UuuCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 2136 | 0.67 | 0.791174 |
Target: 5'- aCAucgUGGUGCUGGgcGACGaccCCGAGGa -3' miRNA: 3'- cGUua-GCCGCGACUuuCUGC---GGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 23804 | 0.67 | 0.811213 |
Target: 5'- gGCA--UGGCGCUGcuGcGCGCCAccgAGGc -3' miRNA: 3'- -CGUuaGCCGCGACuuUcUGCGGU---UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 28456 | 0.66 | 0.874344 |
Target: 5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3' miRNA: 3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 36038 | 0.7 | 0.636443 |
Target: 5'- gGCGcgUGGCGCUGcgcgcGGACacguacagguuGCCGGGGa -3' miRNA: 3'- -CGUuaGCCGCGACuu---UCUG-----------CGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 24574 | 0.7 | 0.636443 |
Target: 5'- cGUGAUCGGCGU----GGGCGCCAGc- -3' miRNA: 3'- -CGUUAGCCGCGacuuUCUGCGGUUcc -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 32464 | 0.69 | 0.703702 |
Target: 5'- cGCGGcuuuuuuUCGGUGCUGGcuuccugcuGGGCGgCCGGGGc -3' miRNA: 3'- -CGUU-------AGCCGCGACUu--------UCUGC-GGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 13344 | 1.14 | 0.00096 |
Target: 5'- uGCAAUCGGCGCUGAAAGACGCCAAGGa -3' miRNA: 3'- -CGUUAGCCGCGACUUUCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 28811 | 0.74 | 0.408662 |
Target: 5'- aGCGcaCcGCGCUGGAcGAUGCCAAGGc -3' miRNA: 3'- -CGUuaGcCGCGACUUuCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 29675 | 0.67 | 0.791174 |
Target: 5'- aGCGccCGGCGCUGGAcaacuGGcaaaccgcGCGCCuGGGc -3' miRNA: 3'- -CGUuaGCCGCGACUU-----UC--------UGCGGuUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 24524 | 0.68 | 0.759795 |
Target: 5'- aGCAggucGUCGGCGUcaau-GuCGCCGAGGc -3' miRNA: 3'- -CGU----UAGCCGCGacuuuCuGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 27376 | 0.68 | 0.738144 |
Target: 5'- cGCGccuGUgGGCGUcgugGGAAGccuuCGCCAAGGc -3' miRNA: 3'- -CGU---UAgCCGCGa---CUUUCu---GCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 27904 | 0.71 | 0.56787 |
Target: 5'- aGCAG-CGGCGC-GGccGGCGCCAccgcGGGc -3' miRNA: 3'- -CGUUaGCCGCGaCUuuCUGCGGU----UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 19141 | 0.68 | 0.774619 |
Target: 5'- uGCAAucgcgugaccUCGGCgaggacacGCUGAucGACGCCGccggcggccgcuaccAGGg -3' miRNA: 3'- -CGUU----------AGCCG--------CGACUuuCUGCGGU---------------UCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 3481 | 0.71 | 0.602032 |
Target: 5'- aGUAG-CGGgGCcGAAAGGCcccGCCAAGGc -3' miRNA: 3'- -CGUUaGCCgCGaCUUUCUG---CGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 10767 | 0.68 | 0.737048 |
Target: 5'- aGCAAUCGGCcgaggccgugcgcGCUGccgucAAGACGCacuGGa -3' miRNA: 3'- -CGUUAGCCG-------------CGACu----UUCUGCGguuCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 36400 | 0.68 | 0.780879 |
Target: 5'- gGCGuugucUCGGUGUguucgcuuUGGcuGGGGCGCCGGGGc -3' miRNA: 3'- -CGUu----AGCCGCG--------ACU--UUCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 26555 | 0.67 | 0.795243 |
Target: 5'- uGCgAGUCGGCgaggaucacccgaauGCcaaacUGAcGGAUGCCGAGGu -3' miRNA: 3'- -CG-UUAGCCG---------------CG-----ACUuUCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 10535 | 0.71 | 0.613488 |
Target: 5'- ----cCGGUGCUGcgcgacuuccagGgcGACGCCAAGGg -3' miRNA: 3'- cguuaGCCGCGAC------------UuuCUGCGGUUCC- -5' |
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26667 | 5' | -51.2 | NC_005808.1 | + | 3922 | 0.7 | 0.64792 |
Target: 5'- aGCGA-CGGCGcCUGGuacaacuuCGCCGAGGu -3' miRNA: 3'- -CGUUaGCCGC-GACUuucu----GCGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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