miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26668 5' -56.5 NC_005808.1 + 21445 0.66 0.588571
Target:  5'- uGCAuuuccugCGGCGgGGGCGGCAggauguuggccucGACCauGCg -3'
miRNA:   3'- -UGUcaa----GCCGCgCCUGCCGU-------------UUGG--CG- -5'
26668 5' -56.5 NC_005808.1 + 28061 0.66 0.600687
Target:  5'- gACGGUcugcUCGaacaGCGGGCaGguGGCCGCg -3'
miRNA:   3'- -UGUCA----AGCcg--CGCCUGcCguUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 33459 0.66 0.586373
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 33363 0.66 0.586373
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 33411 0.66 0.586373
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 19363 0.66 0.589671
Target:  5'- cCAGcgaGGCGCGGuCGGUggccgAGGCCGa -3'
miRNA:   3'- uGUCaagCCGCGCCuGCCG-----UUUGGCg -5'
26668 5' -56.5 NC_005808.1 + 27666 0.66 0.567757
Target:  5'- -gAGUUgGGCGCGcaguCGGCAcuugaGGCCGg -3'
miRNA:   3'- ugUCAAgCCGCGCcu--GCCGU-----UUGGCg -5'
26668 5' -56.5 NC_005808.1 + 33315 0.66 0.586373
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 41902 0.66 0.567757
Target:  5'- gGCGGUaucuUgGGCGCccGGcCGGC--GCCGCc -3'
miRNA:   3'- -UGUCA----AgCCGCG--CCuGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 33267 0.66 0.586373
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 27902 0.66 0.600687
Target:  5'- cCAGcaCGuCGCGGAUGGCAcccagcACCGUg -3'
miRNA:   3'- uGUCaaGCcGCGCCUGCCGUu-----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 40003 0.67 0.503521
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26668 5' -56.5 NC_005808.1 + 2881 0.67 0.524623
Target:  5'- cCAGUUCGaggauguccaGCGCGGugagcGCGG-AAACCGUc -3'
miRNA:   3'- uGUCAAGC----------CGCGCC-----UGCCgUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 630 0.67 0.541744
Target:  5'- uCAGccUCGGCGCGGgugaacgggucagGCGGgGGcuuuugguguuucuGCCGCg -3'
miRNA:   3'- uGUCa-AGCCGCGCC-------------UGCCgUU--------------UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 7007 0.67 0.546054
Target:  5'- aGCGGgUCGGCucGCGuGAUGgGCGuuuguGCCGCc -3'
miRNA:   3'- -UGUCaAGCCG--CGC-CUGC-CGUu----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 1867 0.67 0.547133
Target:  5'- uGCAGguucagcccguggcCGGCGCuggccgGGugGGCGAACaGCa -3'
miRNA:   3'- -UGUCaa------------GCCGCG------CCugCCGUUUGgCG- -5'
26668 5' -56.5 NC_005808.1 + 26531 0.67 0.546054
Target:  5'- uACGGcgCcGCGCGcGGCGGCcacGugCGCg -3'
miRNA:   3'- -UGUCaaGcCGCGC-CUGCCGu--UugGCG- -5'
26668 5' -56.5 NC_005808.1 + 1460 0.67 0.493108
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26668 5' -56.5 NC_005808.1 + 1539 0.67 0.493108
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 28393 0.67 0.493108
Target:  5'- cCAGUUCGaCGCcGGCGGCGcGgCGCc -3'
miRNA:   3'- uGUCAAGCcGCGcCUGCCGUuUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.