Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26668 | 5' | -56.5 | NC_005808.1 | + | 9321 | 0.69 | 0.404443 |
Target: 5'- gGCGGcgcacgUCGGCGCGGcgggcgGCGGCAuccuuUUGCa -3' miRNA: 3'- -UGUCa-----AGCCGCGCC------UGCCGUuu---GGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 10019 | 0.68 | 0.479721 |
Target: 5'- cACAGcgUCGGCGguguccugauacguCGGAgCGGCAucGCCGg -3' miRNA: 3'- -UGUCa-AGCCGC--------------GCCU-GCCGUu-UGGCg -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 10227 | 0.68 | 0.452506 |
Target: 5'- uGCuGggCGGC-CGGGgccuCGGCGgcGACCGCa -3' miRNA: 3'- -UGuCaaGCCGcGCCU----GCCGU--UUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 12017 | 0.67 | 0.524623 |
Target: 5'- aGCAGcgCGGcCGUGGcCGGCGAggucuuGCCcaGCg -3' miRNA: 3'- -UGUCaaGCC-GCGCCuGCCGUU------UGG--CG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 12989 | 0.75 | 0.165381 |
Target: 5'- aGCGcc-CGGCGCuGGACaacuGGCAAACCGCg -3' miRNA: 3'- -UGUcaaGCCGCG-CCUG----CCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 13477 | 0.67 | 0.524623 |
Target: 5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3' miRNA: 3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 13732 | 0.68 | 0.446573 |
Target: 5'- aGCAGcgaggacgUGGCGCGGcgcugggacagcuuCGGCAAguccgGCCGCa -3' miRNA: 3'- -UGUCaa------GCCGCGCCu-------------GCCGUU-----UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 14436 | 0.68 | 0.448546 |
Target: 5'- gGCAa--CGGCGUGGucgaucugaccacCGGCAAGCUGCu -3' miRNA: 3'- -UGUcaaGCCGCGCCu------------GCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 14760 | 0.78 | 0.099834 |
Target: 5'- aGCAG--CGGCGCGGcCGGCGccACCGCg -3' miRNA: 3'- -UGUCaaGCCGCGCCuGCCGUu-UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 14787 | 0.66 | 0.578691 |
Target: 5'- gGCAGcgCGcGCGaGGACGuGCugcGGCUGCg -3' miRNA: 3'- -UGUCaaGC-CGCgCCUGC-CGu--UUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 15321 | 0.66 | 0.578691 |
Target: 5'- ------aGGCGC--GCGGCGAACUGCg -3' miRNA: 3'- ugucaagCCGCGccUGCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 15509 | 0.67 | 0.535301 |
Target: 5'- uGCAGUUCuGCG-GuGAUgGGCAGGCCGa -3' miRNA: 3'- -UGUCAAGcCGCgC-CUG-CCGUUUGGCg -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 16140 | 0.66 | 0.589671 |
Target: 5'- gUAGgacugCGGCcgcacgcugaugGUGGugGGCGuuACCGCg -3' miRNA: 3'- uGUCaa---GCCG------------CGCCugCCGUu-UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 16237 | 0.67 | 0.514028 |
Target: 5'- uCGGUgagCGGCacgauaugGCGGAUGGCGuuGGCCucGCg -3' miRNA: 3'- uGUCAa--GCCG--------CGCCUGCCGU--UUGG--CG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 16443 | 0.66 | 0.589671 |
Target: 5'- -----cCGcauCGCaGACGGCGAGCCGCu -3' miRNA: 3'- ugucaaGCc--GCGcCUGCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17196 | 0.68 | 0.46249 |
Target: 5'- --uGggCGGCaCGGACGGCuacAACuCGCa -3' miRNA: 3'- uguCaaGCCGcGCCUGCCGu--UUG-GCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17561 | 0.73 | 0.224897 |
Target: 5'- gGCGGaUCGcGCGacacgugguuugacuCGGACGGCAAcCCGCu -3' miRNA: 3'- -UGUCaAGC-CGC---------------GCCUGCCGUUuGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17765 | 0.67 | 0.544975 |
Target: 5'- uGCAGUUCGagcagcgagucgcGCGCGaACGGauaGAAgCGCg -3' miRNA: 3'- -UGUCAAGC-------------CGCGCcUGCCg--UUUgGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17915 | 0.66 | 0.567757 |
Target: 5'- gACAGccUgGGCGUGGACguGGC---CCGCg -3' miRNA: 3'- -UGUCa-AgCCGCGCCUG--CCGuuuGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 18064 | 0.66 | 0.578691 |
Target: 5'- -----cCGGCGCGGgguGCGuGCuGGGCCGCc -3' miRNA: 3'- ugucaaGCCGCGCC---UGC-CG-UUUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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