miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26668 5' -56.5 NC_005808.1 + 630 0.67 0.541744
Target:  5'- uCAGccUCGGCGCGGgugaacgggucagGCGGgGGcuuuugguguuucuGCCGCg -3'
miRNA:   3'- uGUCa-AGCCGCGCC-------------UGCCgUU--------------UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 1460 0.67 0.493108
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26668 5' -56.5 NC_005808.1 + 1539 0.67 0.493108
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 1867 0.67 0.547133
Target:  5'- uGCAGguucagcccguggcCGGCGCuggccgGGugGGCGAACaGCa -3'
miRNA:   3'- -UGUCaa------------GCCGCG------CCugCCGUUUGgCG- -5'
26668 5' -56.5 NC_005808.1 + 2376 0.69 0.423284
Target:  5'- aACGGUUCgaGGCGCacGGcAUGGCGGucGCUGCc -3'
miRNA:   3'- -UGUCAAG--CCGCG--CC-UGCCGUU--UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 2881 0.67 0.524623
Target:  5'- cCAGUUCGaggauguccaGCGCGGugagcGCGG-AAACCGUc -3'
miRNA:   3'- uGUCAAGC----------CGCGCC-----UGCCgUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 4042 0.69 0.404443
Target:  5'- -----cCGGcCGCGGcgaGCGGCAGGCCaGCg -3'
miRNA:   3'- ugucaaGCC-GCGCC---UGCCGUUUGG-CG- -5'
26668 5' -56.5 NC_005808.1 + 4352 0.75 0.169977
Target:  5'- aGCAGaggaaUCGGC-CGGACGGCAGGCggaugCGCa -3'
miRNA:   3'- -UGUCa----AGCCGcGCCUGCCGUUUG-----GCG- -5'
26668 5' -56.5 NC_005808.1 + 5244 0.75 0.169977
Target:  5'- cGCAGUUCGGCcggcaggucGgGGuCGGCAAugCGUc -3'
miRNA:   3'- -UGUCAAGCCG---------CgCCuGCCGUUugGCG- -5'
26668 5' -56.5 NC_005808.1 + 5430 0.68 0.452506
Target:  5'- -----aCGGCGCGGAUGGCGG--CGUg -3'
miRNA:   3'- ugucaaGCCGCGCCUGCCGUUugGCG- -5'
26668 5' -56.5 NC_005808.1 + 5734 0.66 0.589671
Target:  5'- cACGGUUCGGCuaaGUuuguCGGCGAGuuGCu -3'
miRNA:   3'- -UGUCAAGCCG---CGccu-GCCGUUUggCG- -5'
26668 5' -56.5 NC_005808.1 + 6535 0.67 0.493108
Target:  5'- cACAGUUCgaugcuGGCGuuGACGuaGCAGcCCGCg -3'
miRNA:   3'- -UGUCAAG------CCGCgcCUGC--CGUUuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 7007 0.67 0.546054
Target:  5'- aGCGGgUCGGCucGCGuGAUGgGCGuuuguGCCGCc -3'
miRNA:   3'- -UGUCaAGCCG--CGC-CUGC-CGUu----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 7441 0.68 0.472587
Target:  5'- aGCAGUUCGGCuuCGGccuuCGcGCGAAUgGCc -3'
miRNA:   3'- -UGUCAAGCCGc-GCCu---GC-CGUUUGgCG- -5'
26668 5' -56.5 NC_005808.1 + 7892 0.68 0.442642
Target:  5'- cCAGggCGGCGCGuGCG-UAGAUCGCc -3'
miRNA:   3'- uGUCaaGCCGCGCcUGCcGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 8221 0.72 0.258966
Target:  5'- cCAGUUCGuGCGCGGccgugcccucguCGGCGAAgUCGCu -3'
miRNA:   3'- uGUCAAGC-CGCGCCu-----------GCCGUUU-GGCG- -5'
26668 5' -56.5 NC_005808.1 + 8570 0.66 0.600687
Target:  5'- gGCAGcgacaGGCGCGacacGACGGuCAcggcGACCGUg -3'
miRNA:   3'- -UGUCaag--CCGCGC----CUGCC-GU----UUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 8636 0.69 0.385239
Target:  5'- uGCGGUggcgaggUCGccggccuucaucGCGCGGuCGGCAuugcguGCCGCg -3'
miRNA:   3'- -UGUCA-------AGC------------CGCGCCuGCCGUu-----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 8778 0.66 0.556875
Target:  5'- gGCAGcacgCGGCGCacGAUGgGUcgGCCGCg -3'
miRNA:   3'- -UGUCaa--GCCGCGc-CUGC-CGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 9221 0.72 0.286111
Target:  5'- cGCAcGUucugCGGCGCGcccGGCGGCAGuuccaguucaccauACCGCa -3'
miRNA:   3'- -UGU-CAa---GCCGCGC---CUGCCGUU--------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.