miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26668 5' -56.5 NC_005808.1 + 42241 0.7 0.351211
Target:  5'- --uGUUCucgGGCcugGCGGACGGCcuGCUGCg -3'
miRNA:   3'- uguCAAG---CCG---CGCCUGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 41902 0.66 0.567757
Target:  5'- gGCGGUaucuUgGGCGCccGGcCGGC--GCCGCc -3'
miRNA:   3'- -UGUCA----AgCCGCG--CCuGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 41603 0.71 0.326524
Target:  5'- cCAGU--GGCGCGGGCaGCGGGCUGa -3'
miRNA:   3'- uGUCAagCCGCGCCUGcCGUUUGGCg -5'
26668 5' -56.5 NC_005808.1 + 41233 0.69 0.4329
Target:  5'- uGCGcUUCGGuCGcCGGAUGcGCAAgGCCGCc -3'
miRNA:   3'- -UGUcAAGCC-GC-GCCUGC-CGUU-UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 41053 0.67 0.52356
Target:  5'- aGCGGUUCGGCuuuaccaagGCcgaacugcuGGGCGGCGAAUaagggggCGCc -3'
miRNA:   3'- -UGUCAAGCCG---------CG---------CCUGCCGUUUG-------GCG- -5'
26668 5' -56.5 NC_005808.1 + 40458 0.69 0.395223
Target:  5'- uACGG--CGGCGCGGuugacCGGCu-GCUGCa -3'
miRNA:   3'- -UGUCaaGCCGCGCCu----GCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 40003 0.67 0.503521
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26668 5' -56.5 NC_005808.1 + 39049 0.7 0.368392
Target:  5'- -----gCGGCGCGGuuGGCgGGACUGCg -3'
miRNA:   3'- ugucaaGCCGCGCCugCCG-UUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 38712 0.71 0.295646
Target:  5'- -aAGUUCGGCG-GcGACGGCAGcGCgGCc -3'
miRNA:   3'- ugUCAAGCCGCgC-CUGCCGUU-UGgCG- -5'
26668 5' -56.5 NC_005808.1 + 38210 0.69 0.423284
Target:  5'- -aAGgccCGGCGC-GACGGCGccuGGCUGCg -3'
miRNA:   3'- ugUCaa-GCCGCGcCUGCCGU---UUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 38057 0.71 0.318585
Target:  5'- cCAGUUC--CGCGG-CGGCAcGACCGCc -3'
miRNA:   3'- uGUCAAGccGCGCCuGCCGU-UUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 37905 0.68 0.482795
Target:  5'- gGCGGcgUCGGUGCcuuucuaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG----------CCUGCCGuu---UGgCG- -5'
26668 5' -56.5 NC_005808.1 + 37576 0.69 0.404443
Target:  5'- aGCGGggcaucgCGGCGCuGAaaGCGGACUGCg -3'
miRNA:   3'- -UGUCaa-----GCCGCGcCUgcCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 37480 0.7 0.377195
Target:  5'- uGCAGUUcaaCGGCGCcagccgcaccGGACgcugGGCcGGCCGCc -3'
miRNA:   3'- -UGUCAA---GCCGCG----------CCUG----CCGuUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 36138 0.7 0.35973
Target:  5'- uGCAGUUCcuGCGC-GACGGCGAcgccuUCGCg -3'
miRNA:   3'- -UGUCAAGc-CGCGcCUGCCGUUu----GGCG- -5'
26668 5' -56.5 NC_005808.1 + 36017 0.7 0.377195
Target:  5'- cGCAGcccccUGGCcgagGCGGAUGGCAAGCCcuacGCg -3'
miRNA:   3'- -UGUCaa---GCCG----CGCCUGCCGUUUGG----CG- -5'
26668 5' -56.5 NC_005808.1 + 35605 0.72 0.253665
Target:  5'- gGCGaaUCgGGCGCGGACGcGCuu-CCGCg -3'
miRNA:   3'- -UGUcaAG-CCGCGCCUGC-CGuuuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 35496 0.76 0.144036
Target:  5'- cGCAGUccaucgugcgcgUgGGCGCGccGugGGUAGGCCGCg -3'
miRNA:   3'- -UGUCA------------AgCCGCGC--CugCCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 34938 0.68 0.452506
Target:  5'- -aAGaaCGGCGCGuGuACGGCAAggaGCCGg -3'
miRNA:   3'- ugUCaaGCCGCGC-C-UGCCGUU---UGGCg -5'
26668 5' -56.5 NC_005808.1 + 34883 0.66 0.578691
Target:  5'- aGCGGUgcaggCGGUGUGGGaucacuucgagGGCuaccGGCCGCa -3'
miRNA:   3'- -UGUCAa----GCCGCGCCUg----------CCGu---UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.