miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26668 5' -56.5 NC_005808.1 + 9321 0.69 0.404443
Target:  5'- gGCGGcgcacgUCGGCGCGGcgggcgGCGGCAuccuuUUGCa -3'
miRNA:   3'- -UGUCa-----AGCCGCGCC------UGCCGUuu---GGCG- -5'
26668 5' -56.5 NC_005808.1 + 39049 0.7 0.368392
Target:  5'- -----gCGGCGCGGuuGGCgGGACUGCg -3'
miRNA:   3'- ugucaaGCCGCGCCugCCG-UUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 18323 0.7 0.376309
Target:  5'- gGCAGUagCGGCGCagcuuGGugGGCAuagggauGACCa- -3'
miRNA:   3'- -UGUCAa-GCCGCG-----CCugCCGU-------UUGGcg -5'
26668 5' -56.5 NC_005808.1 + 37480 0.7 0.377195
Target:  5'- uGCAGUUcaaCGGCGCcagccgcaccGGACgcugGGCcGGCCGCc -3'
miRNA:   3'- -UGUCAA---GCCGCG----------CCUG----CCGuUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 36017 0.7 0.377195
Target:  5'- cGCAGcccccUGGCcgagGCGGAUGGCAAGCCcuacGCg -3'
miRNA:   3'- -UGUCaa---GCCG----CGCCUGCCGUUUGG----CG- -5'
26668 5' -56.5 NC_005808.1 + 24287 0.69 0.385239
Target:  5'- gACAGUgaccacgUgGGgGCGGugagguCGGCGAgcaGCCGCg -3'
miRNA:   3'- -UGUCA-------AgCCgCGCCu-----GCCGUU---UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 8636 0.69 0.385239
Target:  5'- uGCGGUggcgaggUCGccggccuucaucGCGCGGuCGGCAuugcguGCCGCg -3'
miRNA:   3'- -UGUCA-------AGC------------CGCGCCuGCCGUu-----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 28609 0.69 0.38614
Target:  5'- uCAGUUCcuugaaccgGGCGCGGAugaggcCGGCcaguuCCGCg -3'
miRNA:   3'- uGUCAAG---------CCGCGCCU------GCCGuuu--GGCG- -5'
26668 5' -56.5 NC_005808.1 + 28653 0.69 0.38614
Target:  5'- cGCAGUgccagaUCGGUGCcGGCGGCcucGCCaGCg -3'
miRNA:   3'- -UGUCA------AGCCGCGcCUGCCGuu-UGG-CG- -5'
26668 5' -56.5 NC_005808.1 + 25748 0.7 0.368392
Target:  5'- gGCAGcacgcUgGGCGCGcugcugggcGGCGGCAAcgaugGCCGCg -3'
miRNA:   3'- -UGUCa----AgCCGCGC---------CUGCCGUU-----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 36138 0.7 0.35973
Target:  5'- uGCAGUUCcuGCGC-GACGGCGAcgccuUCGCg -3'
miRNA:   3'- -UGUCAAGc-CGCGcCUGCCGUUu----GGCG- -5'
26668 5' -56.5 NC_005808.1 + 27697 0.7 0.35973
Target:  5'- uACAGgcCGcGCGcCGGcaGCGGCucGCCGCc -3'
miRNA:   3'- -UGUCaaGC-CGC-GCC--UGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 18459 0.76 0.156521
Target:  5'- gACGGUcgCGGCGCcGGCGGCGucGGCCGa -3'
miRNA:   3'- -UGUCAa-GCCGCGcCUGCCGU--UUGGCg -5'
26668 5' -56.5 NC_005808.1 + 22075 0.73 0.222531
Target:  5'- cGCGG-UCGGCGCGcggcucGAUGGCGugaauGACCGUa -3'
miRNA:   3'- -UGUCaAGCCGCGC------CUGCCGU-----UUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 28760 0.73 0.240172
Target:  5'- cGCGGUgcgcuucUCGGCGCGcACGGCG--UCGCg -3'
miRNA:   3'- -UGUCA-------AGCCGCGCcUGCCGUuuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 9221 0.72 0.286111
Target:  5'- cGCAcGUucugCGGCGCGcccGGCGGCAGuuccaguucaccauACCGCa -3'
miRNA:   3'- -UGU-CAa---GCCGCGC---CUGCCGUU--------------UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 26142 0.71 0.295646
Target:  5'- gGCAGaUUUGGCGCa-GCGGCucGCCGUc -3'
miRNA:   3'- -UGUC-AAGCCGCGccUGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 23574 0.71 0.326524
Target:  5'- gGCAGgugCGG-GCGGGgGGCGAcgaugGCCGUc -3'
miRNA:   3'- -UGUCaa-GCCgCGCCUgCCGUU-----UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 41603 0.71 0.326524
Target:  5'- cCAGU--GGCGCGGGCaGCGGGCUGa -3'
miRNA:   3'- uGUCAagCCGCGCCUGcCGUUUGGCg -5'
26668 5' -56.5 NC_005808.1 + 23643 0.7 0.334608
Target:  5'- cGCGGUagcCGGCgGCGGGCaGCA-ACUGCa -3'
miRNA:   3'- -UGUCAa--GCCG-CGCCUGcCGUuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.