Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26668 | 5' | -56.5 | NC_005808.1 | + | 29074 | 1.11 | 0.000414 |
Target: 5'- gACAGUUCGGCGCGGACGGCAAACCGCu -3' miRNA: 3'- -UGUCAAGCCGCGCCUGCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 2376 | 0.69 | 0.423284 |
Target: 5'- aACGGUUCgaGGCGCacGGcAUGGCGGucGCUGCc -3' miRNA: 3'- -UGUCAAG--CCGCG--CC-UGCCGUU--UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 41233 | 0.69 | 0.4329 |
Target: 5'- uGCGcUUCGGuCGcCGGAUGcGCAAgGCCGCc -3' miRNA: 3'- -UGUcAAGCC-GC-GCCUGC-CGUU-UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 8570 | 0.66 | 0.600687 |
Target: 5'- gGCAGcgacaGGCGCGacacGACGGuCAcggcGACCGUg -3' miRNA: 3'- -UGUCaag--CCGCGC----CUGCC-GU----UUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 5244 | 0.75 | 0.169977 |
Target: 5'- cGCAGUUCGGCcggcaggucGgGGuCGGCAAugCGUc -3' miRNA: 3'- -UGUCAAGCCG---------CgCCuGCCGUUugGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 4352 | 0.75 | 0.169977 |
Target: 5'- aGCAGaggaaUCGGC-CGGACGGCAGGCggaugCGCa -3' miRNA: 3'- -UGUCa----AGCCGcGCCUGCCGUUUG-----GCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 28457 | 0.72 | 0.253665 |
Target: 5'- -uGGaaCGGC-CGGAaGGCAAGCCGCu -3' miRNA: 3'- ugUCaaGCCGcGCCUgCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 35605 | 0.72 | 0.253665 |
Target: 5'- gGCGaaUCgGGCGCGGACGcGCuu-CCGCg -3' miRNA: 3'- -UGUcaAG-CCGCGCCUGC-CGuuuGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 38712 | 0.71 | 0.295646 |
Target: 5'- -aAGUUCGGCG-GcGACGGCAGcGCgGCc -3' miRNA: 3'- ugUCAAGCCGCgC-CUGCCGUU-UGgCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 4042 | 0.69 | 0.404443 |
Target: 5'- -----cCGGcCGCGGcgaGCGGCAGGCCaGCg -3' miRNA: 3'- ugucaaGCC-GCGCC---UGCCGUUUGG-CG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 42241 | 0.7 | 0.351211 |
Target: 5'- --uGUUCucgGGCcugGCGGACGGCcuGCUGCg -3' miRNA: 3'- uguCAAG---CCG---CGCCUGCCGuuUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 18329 | 0.72 | 0.267088 |
Target: 5'- cACuGUcCGGCGCcacgcucaaGG-UGGCAAGCCGCg -3' miRNA: 3'- -UGuCAaGCCGCG---------CCuGCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 14760 | 0.78 | 0.099834 |
Target: 5'- aGCAG--CGGCGCGGcCGGCGccACCGCg -3' miRNA: 3'- -UGUCaaGCCGCGCCuGCCGUu-UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 28353 | 0.7 | 0.377195 |
Target: 5'- cCAGUUgcGCGUGGACGacGCAcuuAACCGCg -3' miRNA: 3'- uGUCAAgcCGCGCCUGC--CGU---UUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 35496 | 0.76 | 0.144036 |
Target: 5'- cGCAGUccaucgugcgcgUgGGCGCGccGugGGUAGGCCGCg -3' miRNA: 3'- -UGUCA------------AgCCGCGC--CugCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 8221 | 0.72 | 0.258966 |
Target: 5'- cCAGUUCGuGCGCGGccgugcccucguCGGCGAAgUCGCu -3' miRNA: 3'- uGUCAAGC-CGCGCCu-----------GCCGUUU-GGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 40458 | 0.69 | 0.395223 |
Target: 5'- uACGG--CGGCGCGGuugacCGGCu-GCUGCa -3' miRNA: 3'- -UGUCaaGCCGCGCCu----GCCGuuUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 32807 | 0.69 | 0.4329 |
Target: 5'- -uGGUUCGGCGUGcGCGaccuGGCCGCg -3' miRNA: 3'- ugUCAAGCCGCGCcUGCcgu-UUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 12989 | 0.75 | 0.165381 |
Target: 5'- aGCGcc-CGGCGCuGGACaacuGGCAAACCGCg -3' miRNA: 3'- -UGUcaaGCCGCG-CCUG----CCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17561 | 0.73 | 0.224897 |
Target: 5'- gGCGGaUCGcGCGacacgugguuugacuCGGACGGCAAcCCGCu -3' miRNA: 3'- -UGUCaAGC-CGC---------------GCCUGCCGUUuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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