miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26668 5' -56.5 NC_005808.1 + 29074 1.11 0.000414
Target:  5'- gACAGUUCGGCGCGGACGGCAAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGCGCCUGCCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 19469 0.8 0.079349
Target:  5'- cAUAGUUCagcuugcgccaGGUGcCGGugGGCAGGCCGCu -3'
miRNA:   3'- -UGUCAAG-----------CCGC-GCCugCCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 14760 0.78 0.099834
Target:  5'- aGCAG--CGGCGCGGcCGGCGccACCGCg -3'
miRNA:   3'- -UGUCaaGCCGCGCCuGCCGUu-UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 35496 0.76 0.144036
Target:  5'- cGCAGUccaucgugcgcgUgGGCGCGccGugGGUAGGCCGCg -3'
miRNA:   3'- -UGUCA------------AgCCGCGC--CugCCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 18459 0.76 0.156521
Target:  5'- gACGGUcgCGGCGCcGGCGGCGucGGCCGa -3'
miRNA:   3'- -UGUCAa-GCCGCGcCUGCCGU--UUGGCg -5'
26668 5' -56.5 NC_005808.1 + 12989 0.75 0.165381
Target:  5'- aGCGcc-CGGCGCuGGACaacuGGCAAACCGCg -3'
miRNA:   3'- -UGUcaaGCCGCG-CCUG----CCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 5244 0.75 0.169977
Target:  5'- cGCAGUUCGGCcggcaggucGgGGuCGGCAAugCGUc -3'
miRNA:   3'- -UGUCAAGCCG---------CgCCuGCCGUUugGCG- -5'
26668 5' -56.5 NC_005808.1 + 4352 0.75 0.169977
Target:  5'- aGCAGaggaaUCGGC-CGGACGGCAGGCggaugCGCa -3'
miRNA:   3'- -UGUCa----AGCCGcGCCUGCCGUUUG-----GCG- -5'
26668 5' -56.5 NC_005808.1 + 22075 0.73 0.222531
Target:  5'- cGCGG-UCGGCGCGcggcucGAUGGCGugaauGACCGUa -3'
miRNA:   3'- -UGUCaAGCCGCGC------CUGCCGU-----UUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 17561 0.73 0.224897
Target:  5'- gGCGGaUCGcGCGacacgugguuugacuCGGACGGCAAcCCGCu -3'
miRNA:   3'- -UGUCaAGC-CGC---------------GCCUGCCGUUuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 28760 0.73 0.240172
Target:  5'- cGCGGUgcgcuucUCGGCGCGcACGGCG--UCGCg -3'
miRNA:   3'- -UGUCA-------AGCCGCGCcUGCCGUuuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 28457 0.72 0.253665
Target:  5'- -uGGaaCGGC-CGGAaGGCAAGCCGCu -3'
miRNA:   3'- ugUCaaGCCGcGCCUgCCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 35605 0.72 0.253665
Target:  5'- gGCGaaUCgGGCGCGGACGcGCuu-CCGCg -3'
miRNA:   3'- -UGUcaAG-CCGCGCCUGC-CGuuuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 8221 0.72 0.258966
Target:  5'- cCAGUUCGuGCGCGGccgugcccucguCGGCGAAgUCGCu -3'
miRNA:   3'- uGUCAAGC-CGCGCCu-----------GCCGUUU-GGCG- -5'
26668 5' -56.5 NC_005808.1 + 18329 0.72 0.267088
Target:  5'- cACuGUcCGGCGCcacgcucaaGG-UGGCAAGCCGCg -3'
miRNA:   3'- -UGuCAaGCCGCG---------CCuGCCGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 9221 0.72 0.286111
Target:  5'- cGCAcGUucugCGGCGCGcccGGCGGCAGuuccaguucaccauACCGCa -3'
miRNA:   3'- -UGU-CAa---GCCGCGC---CUGCCGUU--------------UGGCG- -5'
26668 5' -56.5 NC_005808.1 + 38712 0.71 0.295646
Target:  5'- -aAGUUCGGCG-GcGACGGCAGcGCgGCc -3'
miRNA:   3'- ugUCAAGCCGCgC-CUGCCGUU-UGgCG- -5'
26668 5' -56.5 NC_005808.1 + 26142 0.71 0.295646
Target:  5'- gGCAGaUUUGGCGCa-GCGGCucGCCGUc -3'
miRNA:   3'- -UGUC-AAGCCGCGccUGCCGuuUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 38057 0.71 0.318585
Target:  5'- cCAGUUC--CGCGG-CGGCAcGACCGCc -3'
miRNA:   3'- uGUCAAGccGCGCCuGCCGU-UUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 23574 0.71 0.326524
Target:  5'- gGCAGgugCGG-GCGGGgGGCGAcgaugGCCGUc -3'
miRNA:   3'- -UGUCaa-GCCgCGCCUgCCGUU-----UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.