miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26668 5' -56.5 NC_005808.1 + 2881 0.67 0.524623
Target:  5'- cCAGUUCGaggauguccaGCGCGGugagcGCGG-AAACCGUc -3'
miRNA:   3'- uGUCAAGC----------CGCGCC-----UGCCgUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 13477 0.67 0.524623
Target:  5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3'
miRNA:   3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5'
26668 5' -56.5 NC_005808.1 + 12017 0.67 0.524623
Target:  5'- aGCAGcgCGGcCGUGGcCGGCGAggucuuGCCcaGCg -3'
miRNA:   3'- -UGUCaaGCC-GCGCCuGCCGUU------UGG--CG- -5'
26668 5' -56.5 NC_005808.1 + 41053 0.67 0.52356
Target:  5'- aGCGGUUCGGCuuuaccaagGCcgaacugcuGGGCGGCGAAUaagggggCGCc -3'
miRNA:   3'- -UGUCAAGCCG---------CG---------CCUGCCGUUUG-------GCG- -5'
26668 5' -56.5 NC_005808.1 + 16237 0.67 0.514028
Target:  5'- uCGGUgagCGGCacgauaugGCGGAUGGCGuuGGCCucGCg -3'
miRNA:   3'- uGUCAa--GCCG--------CGCCUGCCGU--UUGG--CG- -5'
26668 5' -56.5 NC_005808.1 + 40003 0.67 0.503521
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26668 5' -56.5 NC_005808.1 + 24557 0.67 0.503521
Target:  5'- cGCAGcgCGGCGaUGGcgaggccggccACGGuCGGGCCGUc -3'
miRNA:   3'- -UGUCaaGCCGC-GCC-----------UGCC-GUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 28393 0.67 0.493108
Target:  5'- cCAGUUCGaCGCcGGCGGCGcGgCGCc -3'
miRNA:   3'- uGUCAAGCcGCGcCUGCCGUuUgGCG- -5'
26668 5' -56.5 NC_005808.1 + 1460 0.67 0.493108
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26668 5' -56.5 NC_005808.1 + 1539 0.67 0.493108
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 20274 0.67 0.493108
Target:  5'- ----cUCGGCGCGuuCGGCAcGGCCaGCa -3'
miRNA:   3'- ugucaAGCCGCGCcuGCCGU-UUGG-CG- -5'
26668 5' -56.5 NC_005808.1 + 6535 0.67 0.493108
Target:  5'- cACAGUUCgaugcuGGCGuuGACGuaGCAGcCCGCg -3'
miRNA:   3'- -UGUCAAG------CCGCgcCUGC--CGUUuGGCG- -5'
26668 5' -56.5 NC_005808.1 + 25318 0.67 0.493108
Target:  5'- cGCGGcgcCGGCuucGUGGACGGCAAuauccccggcuuGCCGa -3'
miRNA:   3'- -UGUCaa-GCCG---CGCCUGCCGUU------------UGGCg -5'
26668 5' -56.5 NC_005808.1 + 30745 0.68 0.482795
Target:  5'- ----aUUGGCGCGGGguucgcccaGGCcAACCGCg -3'
miRNA:   3'- ugucaAGCCGCGCCUg--------CCGuUUGGCG- -5'
26668 5' -56.5 NC_005808.1 + 37905 0.68 0.482795
Target:  5'- gGCGGcgUCGGUGCcuuucuaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG----------CCUGCCGuu---UGgCG- -5'
26668 5' -56.5 NC_005808.1 + 33759 0.68 0.482795
Target:  5'- gGCuacgUCGGCGaGGACGGUAucaaGGCCGa -3'
miRNA:   3'- -UGuca-AGCCGCgCCUGCCGU----UUGGCg -5'
26668 5' -56.5 NC_005808.1 + 10019 0.68 0.479721
Target:  5'- cACAGcgUCGGCGguguccugauacguCGGAgCGGCAucGCCGg -3'
miRNA:   3'- -UGUCa-AGCCGC--------------GCCU-GCCGUu-UGGCg -5'
26668 5' -56.5 NC_005808.1 + 7441 0.68 0.472587
Target:  5'- aGCAGUUCGGCuuCGGccuuCGcGCGAAUgGCc -3'
miRNA:   3'- -UGUCAAGCCGc-GCCu---GC-CGUUUGgCG- -5'
26668 5' -56.5 NC_005808.1 + 17196 0.68 0.46249
Target:  5'- --uGggCGGCaCGGACGGCuacAACuCGCa -3'
miRNA:   3'- uguCaaGCCGcGCCUGCCGu--UUG-GCG- -5'
26668 5' -56.5 NC_005808.1 + 5430 0.68 0.452506
Target:  5'- -----aCGGCGCGGAUGGCGG--CGUg -3'
miRNA:   3'- ugucaaGCCGCGCCUGCCGUUugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.