Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26668 | 5' | -56.5 | NC_005808.1 | + | 30173 | 0.66 | 0.578691 |
Target: 5'- gACA--UCGacaGCGCcaccaaGGACGGCAucaaGGCCGCa -3' miRNA: 3'- -UGUcaAGC---CGCG------CCUGCCGU----UUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 15321 | 0.66 | 0.578691 |
Target: 5'- ------aGGCGC--GCGGCGAACUGCg -3' miRNA: 3'- ugucaagCCGCGccUGCCGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 18529 | 0.66 | 0.578691 |
Target: 5'- cGCGG-UCGccgcuacuguGCGCGGcAUGG-AAACCGCa -3' miRNA: 3'- -UGUCaAGC----------CGCGCC-UGCCgUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 27666 | 0.66 | 0.567757 |
Target: 5'- -gAGUUgGGCGCGcaguCGGCAcuugaGGCCGg -3' miRNA: 3'- ugUCAAgCCGCGCcu--GCCGU-----UUGGCg -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17915 | 0.66 | 0.567757 |
Target: 5'- gACAGccUgGGCGUGGACguGGC---CCGCg -3' miRNA: 3'- -UGUCa-AgCCGCGCCUG--CCGuuuGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 41902 | 0.66 | 0.567757 |
Target: 5'- gGCGGUaucuUgGGCGCccGGcCGGC--GCCGCc -3' miRNA: 3'- -UGUCA----AgCCGCG--CCuGCCGuuUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 34810 | 0.66 | 0.567757 |
Target: 5'- uGCuGggCGGCgaaggGUGGACGccggcGCAGAUCGCg -3' miRNA: 3'- -UGuCaaGCCG-----CGCCUGC-----CGUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 25214 | 0.66 | 0.556875 |
Target: 5'- aGCGGUgcgUCGGCGCGaugcaGGCAuACCu- -3' miRNA: 3'- -UGUCA---AGCCGCGCcug--CCGUuUGGcg -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 29270 | 0.66 | 0.556875 |
Target: 5'- cCGGUgUCGGgGUGGACgugguaGGCGAcgaACUGCu -3' miRNA: 3'- uGUCA-AGCCgCGCCUG------CCGUU---UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 8778 | 0.66 | 0.556875 |
Target: 5'- gGCAGcacgCGGCGCacGAUGgGUcgGCCGCg -3' miRNA: 3'- -UGUCaa--GCCGCGc-CUGC-CGuuUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 26739 | 0.66 | 0.55579 |
Target: 5'- aACAGaUCGGCGCG--UGGCAccagcacgacacgGACgGCg -3' miRNA: 3'- -UGUCaAGCCGCGCcuGCCGU-------------UUGgCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 1867 | 0.67 | 0.547133 |
Target: 5'- uGCAGguucagcccguggcCGGCGCuggccgGGugGGCGAACaGCa -3' miRNA: 3'- -UGUCaa------------GCCGCG------CCugCCGUUUGgCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 26531 | 0.67 | 0.546054 |
Target: 5'- uACGGcgCcGCGCGcGGCGGCcacGugCGCg -3' miRNA: 3'- -UGUCaaGcCGCGC-CUGCCGu--UugGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 7007 | 0.67 | 0.546054 |
Target: 5'- aGCGGgUCGGCucGCGuGAUGgGCGuuuguGCCGCc -3' miRNA: 3'- -UGUCaAGCCG--CGC-CUGC-CGUu----UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 17765 | 0.67 | 0.544975 |
Target: 5'- uGCAGUUCGagcagcgagucgcGCGCGaACGGauaGAAgCGCg -3' miRNA: 3'- -UGUCAAGC-------------CGCGCcUGCCg--UUUgGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 630 | 0.67 | 0.541744 |
Target: 5'- uCAGccUCGGCGCGGgugaacgggucagGCGGgGGcuuuugguguuucuGCCGCg -3' miRNA: 3'- uGUCa-AGCCGCGCC-------------UGCCgUU--------------UGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 28277 | 0.67 | 0.539594 |
Target: 5'- gGCAGUUCagccaaGGCGCGcgccaguucagcaacGACG-UggGCCGCa -3' miRNA: 3'- -UGUCAAG------CCGCGC---------------CUGCcGuuUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 21740 | 0.67 | 0.539594 |
Target: 5'- cACcGUUgGGCGCGGccgcguccacauaGGaCAGGCCGCc -3' miRNA: 3'- -UGuCAAgCCGCGCCug-----------CC-GUUUGGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 29207 | 0.67 | 0.535301 |
Target: 5'- gGCAGgUCGGaCGCGcGcAUGGCGuccaguCCGCc -3' miRNA: 3'- -UGUCaAGCC-GCGC-C-UGCCGUuu----GGCG- -5' |
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26668 | 5' | -56.5 | NC_005808.1 | + | 15509 | 0.67 | 0.535301 |
Target: 5'- uGCAGUUCuGCG-GuGAUgGGCAGGCCGa -3' miRNA: 3'- -UGUCAAGcCGCgC-CUG-CCGUUUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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