miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26670 5' -55.5 NC_005808.1 + 28612 1.09 0.000546
Target:  5'- gUGCAGCACGAGGCCAGCGAGUACAAGa -3'
miRNA:   3'- -ACGUCGUGCUCCGGUCGCUCAUGUUC- -5'
26670 5' -55.5 NC_005808.1 + 30039 0.78 0.116678
Target:  5'- cGCAGCGCGAGGCCGGCaAGa----- -3'
miRNA:   3'- aCGUCGUGCUCCGGUCGcUCauguuc -5'
26670 5' -55.5 NC_005808.1 + 12017 0.76 0.138666
Target:  5'- aGCAGCGCGGccguGGCCGGCGAGg----- -3'
miRNA:   3'- aCGUCGUGCU----CCGGUCGCUCauguuc -5'
26670 5' -55.5 NC_005808.1 + 14845 0.75 0.169083
Target:  5'- aGCcGgACGAGGgCAGCGAGUugcGCGAGg -3'
miRNA:   3'- aCGuCgUGCUCCgGUCGCUCA---UGUUC- -5'
26670 5' -55.5 NC_005808.1 + 13298 0.74 0.211034
Target:  5'- uUGCAGCGCGccgGGGCCGGCGuuGUAgGc- -3'
miRNA:   3'- -ACGUCGUGC---UCCGGUCGCu-CAUgUuc -5'
26670 5' -55.5 NC_005808.1 + 16326 0.73 0.235199
Target:  5'- cGCGauGCGCGAgccgaccaGGCCGGCGGGUGCc-- -3'
miRNA:   3'- aCGU--CGUGCU--------CCGGUCGCUCAUGuuc -5'
26670 5' -55.5 NC_005808.1 + 31102 0.72 0.268623
Target:  5'- -uCGGUGC-AGGCCGGCGAGUgguGCGAGa -3'
miRNA:   3'- acGUCGUGcUCCGGUCGCUCA---UGUUC- -5'
26670 5' -55.5 NC_005808.1 + 14043 0.72 0.275751
Target:  5'- cGCGcCGCGAuGGCCGGCGGccGCAAGg -3'
miRNA:   3'- aCGUcGUGCU-CCGGUCGCUcaUGUUC- -5'
26670 5' -55.5 NC_005808.1 + 25090 0.72 0.283029
Target:  5'- cGCAGCGCGcccggcgccguGGGauaCAGCGGGUGCu-- -3'
miRNA:   3'- aCGUCGUGC-----------UCCg--GUCGCUCAUGuuc -5'
26670 5' -55.5 NC_005808.1 + 34221 0.71 0.298041
Target:  5'- aGcCAGCGCGAGGCCGGguuCGAGccggACAu- -3'
miRNA:   3'- aC-GUCGUGCUCCGGUC---GCUCa---UGUuc -5'
26670 5' -55.5 NC_005808.1 + 5749 0.71 0.313663
Target:  5'- -cCAGCGCGccGGgCAGCGAGUGCGc- -3'
miRNA:   3'- acGUCGUGCu-CCgGUCGCUCAUGUuc -5'
26670 5' -55.5 NC_005808.1 + 13672 0.71 0.321703
Target:  5'- gGCAGCgGCGAGGCCcuggcuuuGUGGG-ACGAGu -3'
miRNA:   3'- aCGUCG-UGCUCCGGu-------CGCUCaUGUUC- -5'
26670 5' -55.5 NC_005808.1 + 24562 0.7 0.346741
Target:  5'- cGCGGCgaugGCGAGGCCGGCcacGGU-CGGGc -3'
miRNA:   3'- aCGUCG----UGCUCCGGUCGc--UCAuGUUC- -5'
26670 5' -55.5 NC_005808.1 + 5307 0.7 0.355391
Target:  5'- gGCAGguCGAGGCCGuaggccGCGAGcACGu- -3'
miRNA:   3'- aCGUCguGCUCCGGU------CGCUCaUGUuc -5'
26670 5' -55.5 NC_005808.1 + 4047 0.69 0.420084
Target:  5'- cGCGGCgaGCGgcAGGCCAGCGGcc-CAGGg -3'
miRNA:   3'- aCGUCG--UGC--UCCGGUCGCUcauGUUC- -5'
26670 5' -55.5 NC_005808.1 + 16573 0.69 0.429892
Target:  5'- uUGUAGCGCGAcGcGCCGGaCGAGgcCGAc -3'
miRNA:   3'- -ACGUCGUGCU-C-CGGUC-GCUCauGUUc -5'
26670 5' -55.5 NC_005808.1 + 15103 0.69 0.439834
Target:  5'- gGCGGC-CGAGGCCGccggcauccucGCGuGGUGCGu- -3'
miRNA:   3'- aCGUCGuGCUCCGGU-----------CGC-UCAUGUuc -5'
26670 5' -55.5 NC_005808.1 + 11418 0.68 0.449906
Target:  5'- aGCAGCgGCGA-GCCGGCG--UGCAGGu -3'
miRNA:   3'- aCGUCG-UGCUcCGGUCGCucAUGUUC- -5'
26670 5' -55.5 NC_005808.1 + 11511 0.68 0.460103
Target:  5'- gGCAGCGCcugcgcuggcguGAGGCCcuGCGAGcggGCAu- -3'
miRNA:   3'- aCGUCGUG------------CUCCGGu-CGCUCa--UGUuc -5'
26670 5' -55.5 NC_005808.1 + 9391 0.68 0.470422
Target:  5'- gUGCAGCcacugcaugucGCGcAGGCC-GCGGGcuUGCAGGu -3'
miRNA:   3'- -ACGUCG-----------UGC-UCCGGuCGCUC--AUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.