Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26670 | 5' | -55.5 | NC_005808.1 | + | 12017 | 0.76 | 0.138666 |
Target: 5'- aGCAGCGCGGccguGGCCGGCGAGg----- -3' miRNA: 3'- aCGUCGUGCU----CCGGUCGCUCauguuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 29057 | 0.66 | 0.612887 |
Target: 5'- gGCGGCuCGuAGGCCAucaGCGGGU-CAu- -3' miRNA: 3'- aCGUCGuGC-UCCGGU---CGCUCAuGUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 8117 | 0.66 | 0.57679 |
Target: 5'- cUGCAcCGCGcGGCCGGCGuugguugugggcGUGCGGGu -3' miRNA: 3'- -ACGUcGUGCuCCGGUCGCu-----------CAUGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 24304 | 0.66 | 0.567831 |
Target: 5'- gGCGGU--GAGGUCGGCGAGcagccGCGGGu -3' miRNA: 3'- aCGUCGugCUCCGGUCGCUCa----UGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 39773 | 0.67 | 0.556684 |
Target: 5'- cGCuGCGCGuGGCC-GCGAGcACcuGg -3' miRNA: 3'- aCGuCGUGCuCCGGuCGCUCaUGuuC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 8843 | 0.67 | 0.556684 |
Target: 5'- cGCAaCGCG-GGCCAGCGcGUugGc- -3' miRNA: 3'- aCGUcGUGCuCCGGUCGCuCAugUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 16310 | 0.67 | 0.556684 |
Target: 5'- cGC-GCACGGGa--AGCGAGUACGAc -3' miRNA: 3'- aCGuCGUGCUCcggUCGCUCAUGUUc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 33936 | 0.67 | 0.523655 |
Target: 5'- aGCAGC-CGcuGCacaCAGCGAGUACGGc -3' miRNA: 3'- aCGUCGuGCucCG---GUCGCUCAUGUUc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 9391 | 0.68 | 0.470422 |
Target: 5'- gUGCAGCcacugcaugucGCGcAGGCC-GCGGGcuUGCAGGu -3' miRNA: 3'- -ACGUCG-----------UGC-UCCGGuCGCUC--AUGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 11511 | 0.68 | 0.460103 |
Target: 5'- gGCAGCGCcugcgcuggcguGAGGCCcuGCGAGcggGCAu- -3' miRNA: 3'- aCGUCGUG------------CUCCGGu-CGCUCa--UGUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 13298 | 0.74 | 0.211034 |
Target: 5'- uUGCAGCGCGccgGGGCCGGCGuuGUAgGc- -3' miRNA: 3'- -ACGUCGUGC---UCCGGUCGCu-CAUgUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 31102 | 0.72 | 0.268623 |
Target: 5'- -uCGGUGC-AGGCCGGCGAGUgguGCGAGa -3' miRNA: 3'- acGUCGUGcUCCGGUCGCUCA---UGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 25090 | 0.72 | 0.283029 |
Target: 5'- cGCAGCGCGcccggcgccguGGGauaCAGCGGGUGCu-- -3' miRNA: 3'- aCGUCGUGC-----------UCCg--GUCGCUCAUGuuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 24562 | 0.7 | 0.346741 |
Target: 5'- cGCGGCgaugGCGAGGCCGGCcacGGU-CGGGc -3' miRNA: 3'- aCGUCG----UGCUCCGGUCGc--UCAuGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 16573 | 0.69 | 0.429892 |
Target: 5'- uUGUAGCGCGAcGcGCCGGaCGAGgcCGAc -3' miRNA: 3'- -ACGUCGUGCU-C-CGGUC-GCUCauGUUc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 11418 | 0.68 | 0.449906 |
Target: 5'- aGCAGCgGCGA-GCCGGCG--UGCAGGu -3' miRNA: 3'- aCGUCG-UGCUcCGGUCGCucAUGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 24980 | 0.66 | 0.590285 |
Target: 5'- aUGCGGCAaacauCGAGGCCGGUaucgACAAc -3' miRNA: 3'- -ACGUCGU-----GCUCCGGUCGcucaUGUUc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 30039 | 0.78 | 0.116678 |
Target: 5'- cGCAGCGCGAGGCCGGCaAGa----- -3' miRNA: 3'- aCGUCGUGCUCCGGUCGcUCauguuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 14845 | 0.75 | 0.169083 |
Target: 5'- aGCcGgACGAGGgCAGCGAGUugcGCGAGg -3' miRNA: 3'- aCGuCgUGCUCCgGUCGCUCA---UGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 16326 | 0.73 | 0.235199 |
Target: 5'- cGCGauGCGCGAgccgaccaGGCCGGCGGGUGCc-- -3' miRNA: 3'- aCGU--CGUGCU--------CCGGUCGCUCAUGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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