Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26671 | 3' | -59.8 | NC_005808.1 | + | 25325 | 0.7 | 0.203375 |
Target: 5'- gGCGCUCGuCGCCgGgAuugUCCAGGCCGg -3' miRNA: 3'- -CGCGAGUuGUGGgCgU---GGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 25804 | 0.67 | 0.299295 |
Target: 5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3' miRNA: 3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 27421 | 0.74 | 0.096132 |
Target: 5'- cGCGCcUGGCGCaCCGCGCCCGgcGGCCGc -3' miRNA: 3'- -CGCGaGUUGUG-GGCGUGGGU--CCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 27929 | 1 | 0.001084 |
Target: 5'- aGCGCUCAACACCCGC-CCCAGGCCAAg -3' miRNA: 3'- -CGCGAGUUGUGGGCGuGGGUCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 28395 | 0.66 | 0.39126 |
Target: 5'- -aGUUCGACGCCgGCGgCgCGGcGCCAGu -3' miRNA: 3'- cgCGAGUUGUGGgCGUgG-GUC-CGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29139 | 0.71 | 0.172945 |
Target: 5'- aUGCcCGACA-CCGCGCCCgAGGCCGc -3' miRNA: 3'- cGCGaGUUGUgGGCGUGGG-UCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29408 | 0.68 | 0.277494 |
Target: 5'- gGCGUaCAACGCCgGCcaagggcGCCCAgcgcGGCCGAc -3' miRNA: 3'- -CGCGaGUUGUGGgCG-------UGGGU----CCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29433 | 0.76 | 0.076411 |
Target: 5'- cGCGCUC-GCACgUCGCGCCCAGGUg-- -3' miRNA: 3'- -CGCGAGuUGUG-GGCGUGGGUCCGguu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29562 | 0.72 | 0.148277 |
Target: 5'- cGUGCUCGGgguaucgcgucagguCGgCCGCGCCCAGGCg-- -3' miRNA: 3'- -CGCGAGUU---------------GUgGGCGUGGGUCCGguu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29868 | 0.73 | 0.13119 |
Target: 5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3' miRNA: 3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 31165 | 0.66 | 0.382256 |
Target: 5'- cGCGCcuuaUCGGCgACCUGCACgCCGGcucGCCGc -3' miRNA: 3'- -CGCG----AGUUG-UGGGCGUG-GGUC---CGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 31808 | 0.67 | 0.31533 |
Target: 5'- gGCGCagCAGUACauGCAauCCCAGGCCGAa -3' miRNA: 3'- -CGCGa-GUUGUGggCGU--GGGUCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 32107 | 0.66 | 0.390353 |
Target: 5'- uUGCUCAACGCCCuggccGCugccgaccucgacGCCCccgaaucccucaAGGCCGAa -3' miRNA: 3'- cGCGAGUUGUGGG-----CG-------------UGGG------------UCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 32334 | 0.68 | 0.264352 |
Target: 5'- gGCGUccCGACAaCCGcCGCCCAGGUCGc -3' miRNA: 3'- -CGCGa-GUUGUgGGC-GUGGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 32703 | 0.72 | 0.154979 |
Target: 5'- uGCaGCUCGACaucGCCaCGCGCCU-GGCCGAg -3' miRNA: 3'- -CG-CGAGUUG---UGG-GCGUGGGuCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 33384 | 0.66 | 0.37339 |
Target: 5'- cGCGCcgCAGaacguGCgCCGCGCCgccgagCAGGCCAAc -3' miRNA: 3'- -CGCGa-GUUg----UG-GGCGUGG------GUCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 33712 | 0.72 | 0.140272 |
Target: 5'- aGCGCcauUCAcaaugAUGCCCGCGCCCgcuucguggcgaccgAGGCCAAc -3' miRNA: 3'- -CGCG---AGU-----UGUGGGCGUGGG---------------UCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 33891 | 0.69 | 0.220267 |
Target: 5'- gGUGCgCGACAUCCG-ACCC-GGCCAGu -3' miRNA: 3'- -CGCGaGUUGUGGGCgUGGGuCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 34125 | 0.7 | 0.197998 |
Target: 5'- uCGCgUCGGCugCgGCAUCgCAGGCCAc -3' miRNA: 3'- cGCG-AGUUGugGgCGUGG-GUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 34421 | 0.66 | 0.382256 |
Target: 5'- cGgGCagGACGCCaGCGCCUuccuGGGCCGc -3' miRNA: 3'- -CgCGagUUGUGGgCGUGGG----UCCGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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