miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 42199 0.71 0.177718
Target:  5'- uGCuGCUCAACAgUCGCGCgCuGGCCGc -3'
miRNA:   3'- -CG-CGAGUUGUgGGCGUGgGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 42137 0.67 0.31533
Target:  5'- cCGCgaCAGCGCCCGCAagCuGGCCGc -3'
miRNA:   3'- cGCGa-GUUGUGGGCGUggGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 41970 0.68 0.2782
Target:  5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3'
miRNA:   3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 40582 0.67 0.331197
Target:  5'- uGCGCgacuuCGCCagcgaGCGCCUGGGCCu- -3'
miRNA:   3'- -CGCGaguu-GUGGg----CGUGGGUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 39849 0.68 0.2782
Target:  5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3'
miRNA:   3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 38204 0.66 0.37339
Target:  5'- aCGCUCAAgGCCCGgCGCgaCGGcGCCu- -3'
miRNA:   3'- cGCGAGUUgUGGGC-GUGg-GUC-CGGuu -5'
26671 3' -59.8 NC_005808.1 + 37972 0.67 0.300044
Target:  5'- aGCGUggccCAGCAucCCCGCcgacaucaucGCCgAGGCCGAg -3'
miRNA:   3'- -CGCGa---GUUGU--GGGCG----------UGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 36984 0.67 0.300044
Target:  5'- cGCGC-CAcGCGCgaaaCGCACCCcgccgaguGGGCCAAa -3'
miRNA:   3'- -CGCGaGU-UGUGg---GCGUGGG--------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 36215 0.66 0.37692
Target:  5'- gGCGCcgCGGCggccgaccugguguaACCCaGCGCCCcGGCCu- -3'
miRNA:   3'- -CGCGa-GUUG---------------UGGG-CGUGGGuCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 36184 0.66 0.382256
Target:  5'- gGCGCcaaCGACAUgggCCGCGacuacaCCGGGCCGg -3'
miRNA:   3'- -CGCGa--GUUGUG---GGCGUg-----GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 35977 0.77 0.066119
Target:  5'- cGCGCgCAGCGCCaCGCGCCCGcuGGUCAu -3'
miRNA:   3'- -CGCGaGUUGUGG-GCGUGGGU--CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 35882 0.69 0.238342
Target:  5'- cGUGCUCAaGCAgaUgCGCGCCCAGGaCAAg -3'
miRNA:   3'- -CGCGAGU-UGU--GgGCGUGGGUCCgGUU- -5'
26671 3' -59.8 NC_005808.1 + 35534 0.66 0.364666
Target:  5'- cUGUUCAaacgacGCugCCGC-CCgAGGCCAu -3'
miRNA:   3'- cGCGAGU------UGugGGCGuGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 35442 0.69 0.238342
Target:  5'- aGCGCcCGGC-CCUGguCAUCCAGGCCGc -3'
miRNA:   3'- -CGCGaGUUGuGGGC--GUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 35354 0.69 0.25107
Target:  5'- gGCGacaUCG--GCCCGCGCCaguGGCCGAa -3'
miRNA:   3'- -CGCg--AGUugUGGGCGUGGgu-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 35266 0.68 0.257641
Target:  5'- cGCGCUCAAgGCCaUGCGuCUCAaGGUCGAg -3'
miRNA:   3'- -CGCGAGUUgUGG-GCGU-GGGU-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 34618 0.68 0.285337
Target:  5'- aGCGCggCGACAuggaaaccacgaUgCGCGCCgAGGCCAc -3'
miRNA:   3'- -CGCGa-GUUGU------------GgGCGUGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 34458 0.76 0.068064
Target:  5'- aGCGC-CGACACCCGCacGCCCAcaaccaacgccGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUGGGCG--UGGGU-----------CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 34421 0.66 0.382256
Target:  5'- cGgGCagGACGCCaGCGCCUuccuGGGCCGc -3'
miRNA:   3'- -CgCGagUUGUGGgCGUGGG----UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 34125 0.7 0.197998
Target:  5'- uCGCgUCGGCugCgGCAUCgCAGGCCAc -3'
miRNA:   3'- cGCG-AGUUGugGgCGUGG-GUCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.