miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 8545 0.73 0.129005
Target:  5'- aCGCUCGACAgCCGCGCCgauggcgggcagcgaCAGGCgCGAc -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGG---------------GUCCG-GUU- -5'
26671 3' -59.8 NC_005808.1 + 33384 0.66 0.37339
Target:  5'- cGCGCcgCAGaacguGCgCCGCGCCgccgagCAGGCCAAc -3'
miRNA:   3'- -CGCGa-GUUg----UG-GGCGUGG------GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 19094 0.67 0.307615
Target:  5'- cGCGCUCGcggaACugCCGCAggucgagauuCCCAcGGCgCAc -3'
miRNA:   3'- -CGCGAGU----UGugGGCGU----------GGGU-CCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 34458 0.76 0.068064
Target:  5'- aGCGC-CGACACCCGCacGCCCAcaaccaacgccGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUGGGCG--UGGGU-----------CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12438 0.66 0.347644
Target:  5'- gGCGC-CAACugCCGCugauguCCgacgcggugCAGGCCGg -3'
miRNA:   3'- -CGCGaGUUGugGGCGu-----GG---------GUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 36184 0.66 0.382256
Target:  5'- gGCGCcaaCGACAUgggCCGCGacuacaCCGGGCCGg -3'
miRNA:   3'- -CGCGa--GUUGUG---GGCGUg-----GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 15145 0.66 0.364666
Target:  5'- cGCGCUgGcAUACCaGCGCCaGGGCCu- -3'
miRNA:   3'- -CGCGAgU-UGUGGgCGUGGgUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 12617 0.79 0.043934
Target:  5'- cCGUUCGACGgCUGCAUCCAGGCCGu -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 27929 1 0.001084
Target:  5'- aGCGCUCAACACCCGC-CCCAGGCCAAg -3'
miRNA:   3'- -CGCGAGUUGUGGGCGuGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29868 0.73 0.13119
Target:  5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3'
miRNA:   3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 7928 0.69 0.244637
Target:  5'- uGCGCUCGGCguccACCUuCACgCCAcGGCCAu -3'
miRNA:   3'- -CGCGAGUUG----UGGGcGUG-GGU-CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 23743 0.72 0.154979
Target:  5'- gGCGCgcagCAGCGCCaugccgGCGCcaCCGGGCCGAu -3'
miRNA:   3'- -CGCGa---GUUGUGGg-----CGUG--GGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 37972 0.67 0.300044
Target:  5'- aGCGUggccCAGCAucCCCGCcgacaucaucGCCgAGGCCGAg -3'
miRNA:   3'- -CGCGa---GUUGU--GGGCG----------UGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 25804 0.67 0.299295
Target:  5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3'
miRNA:   3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 41970 0.68 0.2782
Target:  5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3'
miRNA:   3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 39849 0.68 0.2782
Target:  5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3'
miRNA:   3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 4775 0.68 0.271205
Target:  5'- gGCGUUCGccCACaCUGCGCCCAGcacGCCGg -3'
miRNA:   3'- -CGCGAGUu-GUG-GGCGUGGGUC---CGGUu -5'
26671 3' -59.8 NC_005808.1 + 8055 0.7 0.197998
Target:  5'- cCGUcCAugACgCGCGCCCAGGUCGc -3'
miRNA:   3'- cGCGaGUugUGgGCGUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 10760 0.7 0.197998
Target:  5'- cGCGCUCGACuucgGCCCGCAguUCUucGGCCu- -3'
miRNA:   3'- -CGCGAGUUG----UGGGCGU--GGGu-CCGGuu -5'
26671 3' -59.8 NC_005808.1 + 8104 0.7 0.203375
Target:  5'- aGCGUUUGAgGCCCuGCACCgCGcGGCCGg -3'
miRNA:   3'- -CGCGAGUUgUGGG-CGUGG-GU-CCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.