miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 27929 1 0.001084
Target:  5'- aGCGCUCAACACCCGC-CCCAGGCCAAg -3'
miRNA:   3'- -CGCGAGUUGUGGGCGuGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 19094 0.67 0.307615
Target:  5'- cGCGCUCGcggaACugCCGCAggucgagauuCCCAcGGCgCAc -3'
miRNA:   3'- -CGCGAGU----UGugGGCGU----------GGGU-CCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 42137 0.67 0.31533
Target:  5'- cCGCgaCAGCGCCCGCAagCuGGCCGc -3'
miRNA:   3'- cGCGa-GUUGUGGGCGUggGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 13139 0.66 0.39126
Target:  5'- cGCGCUUcguCGCCUggugccaggaGCACCUGGGCgCGAc -3'
miRNA:   3'- -CGCGAGuu-GUGGG----------CGUGGGUCCG-GUU- -5'
26671 3' -59.8 NC_005808.1 + 29868 0.73 0.13119
Target:  5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3'
miRNA:   3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 33712 0.72 0.140272
Target:  5'- aGCGCcauUCAcaaugAUGCCCGCGCCCgcuucguggcgaccgAGGCCAAc -3'
miRNA:   3'- -CGCG---AGU-----UGUGGGCGUGGG---------------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29139 0.71 0.172945
Target:  5'- aUGCcCGACA-CCGCGCCCgAGGCCGc -3'
miRNA:   3'- cGCGaGUUGUgGGCGUGGG-UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 19157 0.71 0.177718
Target:  5'- cGCGCgaacCAUCCGCAUCCcGGCCGg -3'
miRNA:   3'- -CGCGaguuGUGGGCGUGGGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 6332 0.69 0.25107
Target:  5'- cGCGUUCcgccccagccaaAGCGCCCG-GCCCgaAGGCCGGg -3'
miRNA:   3'- -CGCGAG------------UUGUGGGCgUGGG--UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 2842 0.68 0.292618
Target:  5'- cGCGCagCGGCGCCaGCACCagcgagGGGCCu- -3'
miRNA:   3'- -CGCGa-GUUGUGGgCGUGGg-----UCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 1754 0.68 0.2782
Target:  5'- gGCGgUCAugGCcgGCCUGCGCCUggcgcgucGGGCCGAu -3'
miRNA:   3'- -CGCgAGU--UG--UGGGCGUGGG--------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 7928 0.69 0.244637
Target:  5'- uGCGCUCGGCguccACCUuCACgCCAcGGCCAu -3'
miRNA:   3'- -CGCGAGUUG----UGGGcGUG-GGU-CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12617 0.79 0.043934
Target:  5'- cCGUUCGACGgCUGCAUCCAGGCCGu -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12996 0.68 0.2782
Target:  5'- gGCGCUgGACaacuggcaaACCgCGCGCCUGGGCgCGg -3'
miRNA:   3'- -CGCGAgUUG---------UGG-GCGUGGGUCCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 34458 0.76 0.068064
Target:  5'- aGCGC-CGACACCCGCacGCCCAcaaccaacgccGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUGGGCG--UGGGU-----------CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 33891 0.69 0.220267
Target:  5'- gGUGCgCGACAUCCG-ACCC-GGCCAGu -3'
miRNA:   3'- -CGCGaGUUGUGGGCgUGGGuCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 34618 0.68 0.285337
Target:  5'- aGCGCggCGACAuggaaaccacgaUgCGCGCCgAGGCCAc -3'
miRNA:   3'- -CGCGa-GUUGU------------GgGCGUGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 31808 0.67 0.31533
Target:  5'- gGCGCagCAGUACauGCAauCCCAGGCCGAa -3'
miRNA:   3'- -CGCGa-GUUGUGggCGU--GGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 8545 0.73 0.129005
Target:  5'- aCGCUCGACAgCCGCGCCgauggcgggcagcgaCAGGCgCGAc -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGG---------------GUCCG-GUU- -5'
26671 3' -59.8 NC_005808.1 + 32703 0.72 0.154979
Target:  5'- uGCaGCUCGACaucGCCaCGCGCCU-GGCCGAg -3'
miRNA:   3'- -CG-CGAGUUG---UGG-GCGUGGGuCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.