miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 13280 0.73 0.13119
Target:  5'- gGCGUcuuUCAGCGCCgauugcagCGCGCCgGGGCCGg -3'
miRNA:   3'- -CGCG---AGUUGUGG--------GCGUGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 27421 0.74 0.096132
Target:  5'- cGCGCcUGGCGCaCCGCGCCCGgcGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUG-GGCGUGGGU--CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 34421 0.66 0.382256
Target:  5'- cGgGCagGACGCCaGCGCCUuccuGGGCCGc -3'
miRNA:   3'- -CgCGagUUGUGGgCGUGGG----UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 24664 0.66 0.382256
Target:  5'- gGUGUugUC-GCGCCCGC-CgCGGGCCAc -3'
miRNA:   3'- -CGCG--AGuUGUGGGCGuGgGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 36215 0.66 0.37692
Target:  5'- gGCGCcgCGGCggccgaccugguguaACCCaGCGCCCcGGCCu- -3'
miRNA:   3'- -CGCGa-GUUG---------------UGGG-CGUGGGuCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 788 0.68 0.258306
Target:  5'- aGCGUauuucagguuuccggCGACGCgCCGCGCCCAGcccuuGCCGAa -3'
miRNA:   3'- -CGCGa--------------GUUGUG-GGCGUGGGUC-----CGGUU- -5'
26671 3' -59.8 NC_005808.1 + 186 0.68 0.271205
Target:  5'- uCGCUgGGCACCgucaCGCugCCGGGCg-- -3'
miRNA:   3'- cGCGAgUUGUGG----GCGugGGUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 4775 0.68 0.271205
Target:  5'- gGCGUUCGccCACaCUGCGCCCAGcacGCCGg -3'
miRNA:   3'- -CGCGAGUu-GUG-GGCGUGGGUC---CGGUu -5'
26671 3' -59.8 NC_005808.1 + 39849 0.68 0.2782
Target:  5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3'
miRNA:   3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 41970 0.68 0.2782
Target:  5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3'
miRNA:   3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 25804 0.67 0.299295
Target:  5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3'
miRNA:   3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 37972 0.67 0.300044
Target:  5'- aGCGUggccCAGCAucCCCGCcgacaucaucGCCgAGGCCGAg -3'
miRNA:   3'- -CGCGa---GUUGU--GGGCG----------UGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 35266 0.68 0.257641
Target:  5'- cGCGCUCAAgGCCaUGCGuCUCAaGGUCGAg -3'
miRNA:   3'- -CGCGAGUUgUGG-GCGU-GGGU-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 35354 0.69 0.25107
Target:  5'- gGCGacaUCG--GCCCGCGCCaguGGCCGAa -3'
miRNA:   3'- -CGCg--AGUugUGGGCGUGGgu-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 8104 0.7 0.203375
Target:  5'- aGCGUUUGAgGCCCuGCACCgCGcGGCCGg -3'
miRNA:   3'- -CGCGAGUUgUGGG-CGUGG-GU-CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 32334 0.68 0.264352
Target:  5'- gGCGUccCGACAaCCGcCGCCCAGGUCGc -3'
miRNA:   3'- -CGCGa-GUUGUgGGC-GUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 10760 0.7 0.197998
Target:  5'- cGCGCUCGACuucgGCCCGCAguUCUucGGCCu- -3'
miRNA:   3'- -CGCGAGUUG----UGGGCGU--GGGu-CCGGuu -5'
26671 3' -59.8 NC_005808.1 + 15944 0.66 0.37339
Target:  5'- -gGCUgCGGCGCCUuCGCgUAGGCCAGu -3'
miRNA:   3'- cgCGA-GUUGUGGGcGUGgGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 14713 0.66 0.37339
Target:  5'- uGCGcCUCcAUGCCCuGCGCCCGGuaGCCc- -3'
miRNA:   3'- -CGC-GAGuUGUGGG-CGUGGGUC--CGGuu -5'
26671 3' -59.8 NC_005808.1 + 38204 0.66 0.37339
Target:  5'- aCGCUCAAgGCCCGgCGCgaCGGcGCCu- -3'
miRNA:   3'- cGCGAGUUgUGGGC-GUGg-GUC-CGGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.