miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 37815 0.69 0.50174
Target:  5'- aGCCGGCGuGCUgggcgCAGUGUGGGCGaacgccgagaacaUCGCg -3'
miRNA:   3'- -UGGCCGC-UGAa----GUUGCGCUCGU-------------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 28055 0.69 0.492266
Target:  5'- gUCGGCGACggucugcUCGAacaGCGGGCAgguggcCGCg -3'
miRNA:   3'- uGGCCGCUGa------AGUUg--CGCUCGUa-----GCG- -5'
26672 3' -54.8 NC_005808.1 + 35350 0.69 0.492266
Target:  5'- gGCCGGCGACaUCGGCccGCGccaguGGCcgaaGUUGCa -3'
miRNA:   3'- -UGGCCGCUGaAGUUG--CGC-----UCG----UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 4261 0.69 0.492266
Target:  5'- uGCCGGCcg--UCAGCGCcGGCAUgGUg -3'
miRNA:   3'- -UGGCCGcugaAGUUGCGcUCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 26269 0.69 0.481838
Target:  5'- cGCCGGCcuggUCGGCuCGcGCAUCGCg -3'
miRNA:   3'- -UGGCCGcugaAGUUGcGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 41788 0.69 0.481838
Target:  5'- uUCGGCaagGGCUg-GGCGCGGcGCGUCGCc -3'
miRNA:   3'- uGGCCG---CUGAagUUGCGCU-CGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 30424 0.69 0.471517
Target:  5'- gGCaUGGCGAUg--AGCGCGGGCAgggccUCGCc -3'
miRNA:   3'- -UG-GCCGCUGaagUUGCGCUCGU-----AGCG- -5'
26672 3' -54.8 NC_005808.1 + 32881 0.7 0.46131
Target:  5'- cGCCcGCGGCUUCGAgGCGuaucucuucgagGGCAagGCg -3'
miRNA:   3'- -UGGcCGCUGAAGUUgCGC------------UCGUagCG- -5'
26672 3' -54.8 NC_005808.1 + 17074 0.7 0.46131
Target:  5'- uGCCGGCGGCggCAAaacCGAccuCAUCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUgc-GCUc--GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 38719 0.7 0.451221
Target:  5'- -gCGGCGACggCAGCGCGgccuacAGCGacggCGCc -3'
miRNA:   3'- ugGCCGCUGaaGUUGCGC------UCGUa---GCG- -5'
26672 3' -54.8 NC_005808.1 + 9955 0.7 0.451221
Target:  5'- -gCGGCGccgaACUUCGAcaggacagcacCGCG-GCGUCGCg -3'
miRNA:   3'- ugGCCGC----UGAAGUU-----------GCGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 35470 0.7 0.451221
Target:  5'- aGCCGaCGACUUCGcggACGUGAGCGgggaaacCGUg -3'
miRNA:   3'- -UGGCcGCUGAAGU---UGCGCUCGUa------GCG- -5'
26672 3' -54.8 NC_005808.1 + 36052 0.7 0.441254
Target:  5'- cGCgGGCuGCUacgUCAACGCcAGCAUCGa -3'
miRNA:   3'- -UGgCCGcUGA---AGUUGCGcUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 26596 0.7 0.441254
Target:  5'- cACCGGCGACcugUCccUGCGcGCggCGCa -3'
miRNA:   3'- -UGGCCGCUGa--AGuuGCGCuCGuaGCG- -5'
26672 3' -54.8 NC_005808.1 + 35046 0.7 0.431413
Target:  5'- aGCCGGUGGCgccgCAGauCGAGCA-CGCc -3'
miRNA:   3'- -UGGCCGCUGaa--GUUgcGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 9316 0.7 0.431413
Target:  5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3'
miRNA:   3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5'
26672 3' -54.8 NC_005808.1 + 2255 0.7 0.42557
Target:  5'- gGCCGGC-AgUUCGACGCGcaccacguugacgauGGguUCGCu -3'
miRNA:   3'- -UGGCCGcUgAAGUUGCGC---------------UCguAGCG- -5'
26672 3' -54.8 NC_005808.1 + 4178 0.7 0.421701
Target:  5'- aGCCGGCcGCcUCgAugGCGGGCAUguuggcCGCg -3'
miRNA:   3'- -UGGCCGcUGaAG-UugCGCUCGUA------GCG- -5'
26672 3' -54.8 NC_005808.1 + 14026 0.7 0.421701
Target:  5'- uGCCGGUGGC--CGACGUGcGCGcCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUGCGCuCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 21831 0.7 0.412122
Target:  5'- aGCCGcGCGAUgagUCgAGCGCGGcGCAgCGCc -3'
miRNA:   3'- -UGGC-CGCUGa--AG-UUGCGCU-CGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.