miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 1372 0.67 0.601124
Target:  5'- uCCGGCGACcgaAGCGCaAGUccUCGCg -3'
miRNA:   3'- uGGCCGCUGaagUUGCGcUCGu-AGCG- -5'
26672 3' -54.8 NC_005808.1 + 25843 0.67 0.601124
Target:  5'- cGCCGGUGGCU---ACGCccacGAGCGUgacCGCc -3'
miRNA:   3'- -UGGCCGCUGAaguUGCG----CUCGUA---GCG- -5'
26672 3' -54.8 NC_005808.1 + 30546 0.67 0.589974
Target:  5'- cAUCGGCgccaucGACUUCGacACGCuGGGCAagaccUCGCc -3'
miRNA:   3'- -UGGCCG------CUGAAGU--UGCG-CUCGU-----AGCG- -5'
26672 3' -54.8 NC_005808.1 + 30453 0.67 0.589974
Target:  5'- cGCCuacGCGGaagcgCAGCGCGuggcGCGUCGCg -3'
miRNA:   3'- -UGGc--CGCUgaa--GUUGCGCu---CGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 18398 0.67 0.589974
Target:  5'- cGCCGGUGGCggccacgUCGGCGaagguGGCGUUGUc -3'
miRNA:   3'- -UGGCCGCUGa------AGUUGCgc---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 29053 0.67 0.589974
Target:  5'- cACCGGCGGCUcguaggccaUCAGCGggucauccuCGGGCGcCGa -3'
miRNA:   3'- -UGGCCGCUGA---------AGUUGC---------GCUCGUaGCg -5'
26672 3' -54.8 NC_005808.1 + 17306 0.67 0.587748
Target:  5'- gGCCGGCcgcacgaccucaaGGCaUUCGACGaagugacCGAGCAgCGCg -3'
miRNA:   3'- -UGGCCG-------------CUG-AAGUUGC-------GCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 34746 0.68 0.578861
Target:  5'- cUgGGUGACUUCaAGCGCGuGCGccuggucaUCGUg -3'
miRNA:   3'- uGgCCGCUGAAG-UUGCGCuCGU--------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 36592 0.68 0.567794
Target:  5'- cACCGGCGAagUCGuCGCcauuuuGAGCGaCGCa -3'
miRNA:   3'- -UGGCCGCUgaAGUuGCG------CUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 19145 0.68 0.567794
Target:  5'- cGCCGGCGugUac-GCGCGAacCAUcCGCa -3'
miRNA:   3'- -UGGCCGCugAaguUGCGCUc-GUA-GCG- -5'
26672 3' -54.8 NC_005808.1 + 38850 0.68 0.567794
Target:  5'- cCCGGCGAgaagugccgccCUcaUCAAaucCGCGAGCAUgaGCg -3'
miRNA:   3'- uGGCCGCU-----------GA--AGUU---GCGCUCGUAg-CG- -5'
26672 3' -54.8 NC_005808.1 + 10865 0.68 0.567794
Target:  5'- cCUGcGUGGCUUCGgucgGCGCGAuGCG-CGCg -3'
miRNA:   3'- uGGC-CGCUGAAGU----UGCGCU-CGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 20308 0.68 0.561179
Target:  5'- uGCuCGGCGGCcgguugCGAUGCGGGCuggccuucaguggucGUUGCg -3'
miRNA:   3'- -UG-GCCGCUGaa----GUUGCGCUCG---------------UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 31018 0.68 0.545829
Target:  5'- aGCCGGCGGCccu-GgGCG-GCAUgGCu -3'
miRNA:   3'- -UGGCCGCUGaaguUgCGCuCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 16346 0.68 0.545829
Target:  5'- gGCCGGCGGgugcccgugcCUUCGgcgACGCGcGCAaaacugCGCg -3'
miRNA:   3'- -UGGCCGCU----------GAAGU---UGCGCuCGUa-----GCG- -5'
26672 3' -54.8 NC_005808.1 + 25166 0.68 0.534949
Target:  5'- uGCUGGCGgggccACUgcucaagggCGACGUGGGCGcCGCu -3'
miRNA:   3'- -UGGCCGC-----UGAa--------GUUGCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 33965 0.68 0.534949
Target:  5'- gGCCGGCGACcucgccaccgCAGCGgcCGAGaagCGCa -3'
miRNA:   3'- -UGGCCGCUGaa--------GUUGC--GCUCguaGCG- -5'
26672 3' -54.8 NC_005808.1 + 22609 0.68 0.524145
Target:  5'- aGuuGGCGAgUUCuACGCGGaCAUCGg -3'
miRNA:   3'- -UggCCGCUgAAGuUGCGCUcGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 26122 0.69 0.513426
Target:  5'- uGCCGGCauGugUUCGuCGCG-GCAgauuuggCGCa -3'
miRNA:   3'- -UGGCCG--CugAAGUuGCGCuCGUa------GCG- -5'
26672 3' -54.8 NC_005808.1 + 1042 0.69 0.513426
Target:  5'- gGCCGGCGGCagcaugUCGcCGCGAaccgGCGUC-Ca -3'
miRNA:   3'- -UGGCCGCUGa-----AGUuGCGCU----CGUAGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.